| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645809
GI number: 15645809
Start: 1265308
End: 1267386
Strand: Reverse
Name: Not Available
Synonym: HP1195
Alternate gene names: 15645809
Gene position: 1267386-1265308 (Counterclockwise)
Preceding gene: 15645810
Following gene: 15645808
Centisome position: 75.99
GC content: 45.17
Gene sequence:
>2079_bases ATGGCTAGAAAAACCCCATTAAATAGGATCAGGAATATTGGTATCGCCGCTCACATTGACGCTGGGAAAACCACCACTTC TGAAAGGATTTTATTCTATACAGGCGTGAGCCATAAGATTGGCGAAGTGCATGACGGCGCGGCGACAATGGATTGGATGG AGCAAGAAAAAGAAAGAGGGATCACTATCACTTCTGCGGCAACGACTTGTTTTTGGAAGGATCACCAAATCAATTTGATT GACACCCCAGGGCATGTGGATTTCACTATTGAAGTGGAACGATCCATGCGCGTGCTAGATGGCGCGGTTTCGGTGTTTTG CTCGGTTGGGGGAGTGCAACCTCAAAGCGAGACCGTGTGGCGTCAAGCGAATAAATACGGCGTGCCTAGGATTGTTTTTG TCAATAAAATGGATAGGATTGGAGCGAATTTCTATAATGTAGAAAACCAGATTAAGCTTCGCTTGAAAGCTAATCCTGTG CCTATTAATATCCCTATTGGGGCTGAAGACACTTTCATTGGCGTGATTGATTTAGTCCAAATGAAAGCGATCGTTTGGAA TAATGAAACCATGGGGGCCAAATACGATGTGGAAGAAATCCCTAGCGATTTGTTAGAAAAGGCTAAAGAATACCGAGAAA AGCTTGTAGAAGCCGTAGCCGAGCAAGATGAAGCCTTGATGGAAAAGTATTTGGGCGGTGAAGAATTGAGTATTGAAGAA ATCAAAAAAGGCATTAAAGCGGGTTGTTTGAACATGAGCCTTGTCCCTATGCTTTGTGGTTCTTCTTTTAAAAATAAAGG CGTGCAGACCTTATTAGACGCAGTCATTGATTACTTACCAGCGCCTACGGAGGTTGTGGATATTAAGGGGATTGATCCAA AAACCGAAGAAGAGGTTTTTGTGAAATCCAGCGATGATGGCGAGTTTGCCGGTTTGGCGTTTAAAATCATGACGGATCCT TTTGTGGGCCAACTCACTTTTGTGCGCGTGTATCGCGGCAAGCTAGAGTCCGGTAGCTATGTGTATAACTCCACCAAAGA CAAAAAAGAGCGCGTGGGAAGACTGCTTAAAATGCACTCCAATAAGAGAGAAGACATTAAAGAAGTTTATGCGGGTGAGA TTTGCGCGTTTGTGGGCTTAAAAGACACGCTAACCGGGGACACGCTTTGCGATGAAAAAAATGCGGTGGTTTTAGAGAGA ATGGAATTTCCTGAGCCAGTCATTCACATCGCTGTGGAGCCTAAAACGAAAGCAGACCAAGAAAAAATGGGCGTAGCGTT AGGCAAGCTCGCTGAAGAAGATCCAAGCTTTAGGGTGATGACTCAAGAAGAAACCGGGCAAACCCTTATTGGTGGCATGG GTGAATTGCACCTAGAAATCATCGTGGACAGGTTGAAGAGAGAATTTAAGGTGGAAGCTGAAATCGGTCAGCCGCAAGTC GCCTTTAGAGAGACTATCCGCTCAAGCGTGAGCAAAGAGCATAAATACGCTAAGCAAAGCGGTGGTCGTGGGCAATACGG GCATGTGTTTATCAAGCTTGAGCCTAAAGAGCCTGGCAGTGGGTATGAATTTGTGAATGAAATTTCTGGGGGCGTGATCC CTAAAGAATATATCCCTGCGGTGGATAAGGGTATCCAAGAAGCGATGCAAAATGGCGTTTTGGCAGGCTATCCGGTGGTG GATTTTAAAGTTACCCTTTATGATGGGAGCTACCATGATGTGGATTCTTCAGAAATGGCGTTTAAAATCGCTGGCTCTAT GGCGTTTAAAGAAGCGAGTCGCGCGGCTAACCCGGTTTTACTAGAGCCTATGATGAAAGTGGAAGTGGAAGTCCCTGAAG AATACATGGGCGATGTGATTGGCGATTTGAATAGAAGAAGAGGGCAAATCAATTCTATGGACGATAGATTAGGCTTGAAA ATCGTGAACGCTTTTGTGCCGTTGGTGGAAATGTTTGGCTATTCTACGGATTTACGATCAGCCACCCAAGGGCGTGGGAC TTACTCTATGGAGTTTGATCATTATGGCGAAGTGCCTAGCAATATCGCTAAGGAAATTGTAGAAAAGCGCAAAGGCTGA
Upstream 100 bases:
>100_bases CTAGCGATAAGGGTGCGGCTTTTAAGAAAAAAGAAGATGTGCATAAAATGGCAGAAGCGAATAAAGCGTTCGCACACTAC CGCTGGTAATTGGAGTTAGA
Downstream 100 bases:
>100_bases TTTAATTATAACGCTCTCTTATTTTTAGGGGGTGTTATAGGTGCTGTTTAAACTTTTTCTCTTTTGGGTTTAAAAAGACT TTTTGAGGGTTTTTATCCCT
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G [H]
Number of amino acids: Translated: 692; Mature: 691
Protein sequence:
>692_residues MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWKDHQINLI DTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPV PINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEE IKKGIKAGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDP FVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLER MEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQV AFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVV DFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLK IVNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG
Sequences:
>Translated_692_residues MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWKDHQINLI DTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPV PINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEE IKKGIKAGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDP FVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLER MEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQV AFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVV DFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLK IVNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG >Mature_691_residues ARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWKDHQINLID TPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVP INIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEEI KKGIKAGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDPF VGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERM EFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVA FRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVVD FKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKI VNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=696, Percent_Identity=46.264367816092, Blast_Score=600, Evalue=1e-171, Organism=Homo sapiens, GI19923640, Length=727, Percent_Identity=39.0646492434663, Blast_Score=486, Evalue=1e-137, Organism=Homo sapiens, GI25306287, Length=727, Percent_Identity=36.5887207702889, Blast_Score=424, Evalue=1e-118, Organism=Homo sapiens, GI25306283, Length=450, Percent_Identity=41.3333333333333, Blast_Score=322, Evalue=9e-88, Organism=Homo sapiens, GI4503483, Length=465, Percent_Identity=27.5268817204301, Blast_Score=121, Evalue=3e-27, Organism=Homo sapiens, GI157426893, Length=150, Percent_Identity=37.3333333333333, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI94966754, Length=137, Percent_Identity=39.4160583941606, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI310132016, Length=118, Percent_Identity=39.8305084745763, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI310110807, Length=118, Percent_Identity=39.8305084745763, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI310123363, Length=118, Percent_Identity=39.8305084745763, Blast_Score=81, Evalue=4e-15, Organism=Escherichia coli, GI1789738, Length=703, Percent_Identity=66.7140825035562, Blast_Score=954, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=487, Percent_Identity=26.4887063655031, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI48994988, Length=163, Percent_Identity=39.2638036809816, Blast_Score=112, Evalue=9e-26, Organism=Escherichia coli, GI1788922, Length=152, Percent_Identity=37.5, Blast_Score=89, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17533571, Length=682, Percent_Identity=43.108504398827, Blast_Score=545, Evalue=1e-155, Organism=Caenorhabditis elegans, GI17556745, Length=720, Percent_Identity=29.8611111111111, Blast_Score=326, Evalue=2e-89, Organism=Caenorhabditis elegans, GI17506493, Length=499, Percent_Identity=26.4529058116232, Blast_Score=127, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17557151, Length=156, Percent_Identity=39.1025641025641, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71988819, Length=141, Percent_Identity=34.7517730496454, Blast_Score=86, Evalue=8e-17, Organism=Caenorhabditis elegans, GI71988811, Length=141, Percent_Identity=34.7517730496454, Blast_Score=85, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323098, Length=688, Percent_Identity=42.5872093023256, Blast_Score=559, Evalue=1e-160, Organism=Saccharomyces cerevisiae, GI6322359, Length=791, Percent_Identity=33.5018963337547, Blast_Score=404, Evalue=1e-113, Organism=Saccharomyces cerevisiae, GI6324707, Length=518, Percent_Identity=26.8339768339768, Blast_Score=125, Evalue=3e-29, Organism=Saccharomyces cerevisiae, GI6320593, Length=518, Percent_Identity=26.8339768339768, Blast_Score=125, Evalue=3e-29, Organism=Saccharomyces cerevisiae, GI6323320, Length=154, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6324166, Length=147, Percent_Identity=36.734693877551, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324761, Length=130, Percent_Identity=33.8461538461538, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24582462, Length=700, Percent_Identity=44.2857142857143, Blast_Score=599, Evalue=1e-171, Organism=Drosophila melanogaster, GI221458488, Length=732, Percent_Identity=33.7431693989071, Blast_Score=389, Evalue=1e-108, Organism=Drosophila melanogaster, GI24585711, Length=450, Percent_Identity=28.2222222222222, Blast_Score=132, Evalue=7e-31, Organism=Drosophila melanogaster, GI24585713, Length=450, Percent_Identity=28.2222222222222, Blast_Score=132, Evalue=7e-31, Organism=Drosophila melanogaster, GI24585709, Length=450, Percent_Identity=28.2222222222222, Blast_Score=132, Evalue=7e-31, Organism=Drosophila melanogaster, GI78706572, Length=158, Percent_Identity=36.7088607594937, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI28574573, Length=143, Percent_Identity=36.3636363636364, Blast_Score=89, Evalue=1e-17,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 77022; Mature: 76891
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERG CCCCCHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC ITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVW EEEEECCEEEEEECCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHH RQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQ HHHHHCCCCEEEEEECHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHH MKAIVWNNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEE HHHHEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH IKKGIKAGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVF HHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEE VKSSDDGEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHS EECCCCCCEEEEEEEEECCCCCCHHHEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHC NKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQ CCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCH EKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQV HHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCHH AFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPA HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHH VDKGIQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVL HHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCEE LEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRS ECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH ATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG HHCCCCEEEEECCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure ARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERG CCCCHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC ITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVW EEEEECCEEEEEECCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHH RQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQ HHHHHCCCCEEEEEECHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHH MKAIVWNNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEE HHHHEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH IKKGIKAGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVF HHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEE VKSSDDGEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHS EECCCCCCEEEEEEEEECCCCCCHHHEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHC NKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQ CCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCCH EKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQV HHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHEEEEECCCCCHH AFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPA HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHH VDKGIQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVL HHHHHHHHHHCCCEECCCEEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCEE LEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRS ECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH ATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG HHCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA