| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645789
GI number: 15645789
Start: 1241825
End: 1243132
Strand: Reverse
Name: Not Available
Synonym: HP1175
Alternate gene names: 15645789
Gene position: 1243132-1241825 (Counterclockwise)
Preceding gene: 15645790
Following gene: 15645788
Centisome position: 74.53
GC content: 44.19
Gene sequence:
>1308_bases ATGGGGTTTTTCAAGCTTAAAGAACACAACACTAACATTGCCACCGAGTTTAGAGCGGGTTTAACGACCTTTATCACCAT GATTTACATCGTGCCCTTAAACGCTCTTATCCTTTCTCAAGCCAACATGCCTTATGAAGCCCTTTTAAGTGCAACGGCCA TTATCACTATCTTATCGAGCGTGTTTAACGGATTGTGGGCAAACACCCCTATCGCTATGAGCGTGGGCTTAGGGCTGTCA GCTTATTTTAGCTTCGGGTTGGTTCAAGGGTTAAAACTCCCTTGGCAGAGCGCTTTAGGCATCGTAGCGCTCTCGGGAGC GATTTTTGTGATTTTGTCTTTCACTAAATTTAGAAGTTGGGTCATGCGAAGCATTCCTAGCGATTTAAGGCGTGCGGTGA GTGCGGGGATAGGGGCTTTTATCGCGTTTATTGGCCTTAAAGAAATGCATATCGTCGTTACCCATAAGGCTACGCTTGTA ACCTTAGGCGATTTTGGCGATCCGCATGTGTTATTGGGGGTTGTGGGGATCATTCTAACTTTCGCGCTCTACACGCTCAA AATCAGGGGTTCTTTCATTATAGCGGTCTTAATCACTTCCATTCTCGCATGGGTTTTAAAGCTAGCCCCTTACCCTAGCG AGTTTTTTTCCATGCCCGCTAGCATTGGCCCTATCGCCTTTCAATTAGACTTTAAGGGCATTTTTTTTGATGCGAGTGGG GCTTTCACTTTAGCGTTAGTGCCAGTTATTATCACTTTTTTTGTAACCGATTTGTTTGATTCTTTAGGCACGCTTGCAGG GATTGGCCACAAGACTGATTTTTTCAATGATGAAGAAAAAAACAAGGAATTGGAAAAGACTTTGGAAGCGGATGCGGTGG CTTCTTTAGGGAGCGCGGTGGTGGGCGTTTCTACTACGACCGCTTTTATAGAGAGCGCGAGTGGGGTTGAAGAGGGGGGC CGCACAGGGCTTACAGCGGTTTTTACCGGATTATTTTTTGTTTTAACGCTCTTTTGCTTGCCTCTTTTAAAAGCTATTCC TAGCAATGCGATTTATCCGGTGCTGGTGGTAGTAGGGGTTTTGATGTTTAGCGTGTTAGAGGGGGTGAATTTTAAAGACA TGGCCATTAGCGTTTCCACTTTTTTAACCGTGGTGATGATGCCCTTAACCTTCTCCATTGCCGATGGCTTAGCCTTTGGC TTTTTGTCTTATAGTATCATCAAATTGGTTCAAAAAGACTTCAAAGCACTCAATTCAGGCATTATCATTCTCTGCATCAT TTCTGTTTCTGTATTTATCTTTCGTTAA
Upstream 100 bases:
>100_bases AATCAAGCATCTTAAGGCAATTTAAAATAAAATAGCGCTAGCATGACCCTAAAGCCCCTTATTAAATTAATCTATACCAA ATAGTAAGGAGTTATCTAAC
Downstream 100 bases:
>100_bases GCTCTTTTTAAGGGGCTTTGCATTTTTTACTCATTTCATGCCTCTTTTTCTTTATTTAGACAGATTATTATCTTAAAATA ATTGTAATATCATTATTATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MGFFKLKEHNTNIATEFRAGLTTFITMIYIVPLNALILSQANMPYEALLSATAIITILSSVFNGLWANTPIAMSVGLGLS AYFSFGLVQGLKLPWQSALGIVALSGAIFVILSFTKFRSWVMRSIPSDLRRAVSAGIGAFIAFIGLKEMHIVVTHKATLV TLGDFGDPHVLLGVVGIILTFALYTLKIRGSFIIAVLITSILAWVLKLAPYPSEFFSMPASIGPIAFQLDFKGIFFDASG AFTLALVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELEKTLEADAVASLGSAVVGVSTTTAFIESASGVEEGG RTGLTAVFTGLFFVLTLFCLPLLKAIPSNAIYPVLVVVGVLMFSVLEGVNFKDMAISVSTFLTVVMMPLTFSIADGLAFG FLSYSIIKLVQKDFKALNSGIIILCIISVSVFIFR
Sequences:
>Translated_435_residues MGFFKLKEHNTNIATEFRAGLTTFITMIYIVPLNALILSQANMPYEALLSATAIITILSSVFNGLWANTPIAMSVGLGLS AYFSFGLVQGLKLPWQSALGIVALSGAIFVILSFTKFRSWVMRSIPSDLRRAVSAGIGAFIAFIGLKEMHIVVTHKATLV TLGDFGDPHVLLGVVGIILTFALYTLKIRGSFIIAVLITSILAWVLKLAPYPSEFFSMPASIGPIAFQLDFKGIFFDASG AFTLALVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELEKTLEADAVASLGSAVVGVSTTTAFIESASGVEEGG RTGLTAVFTGLFFVLTLFCLPLLKAIPSNAIYPVLVVVGVLMFSVLEGVNFKDMAISVSTFLTVVMMPLTFSIADGLAFG FLSYSIIKLVQKDFKALNSGIIILCIISVSVFIFR >Mature_434_residues GFFKLKEHNTNIATEFRAGLTTFITMIYIVPLNALILSQANMPYEALLSATAIITILSSVFNGLWANTPIAMSVGLGLSA YFSFGLVQGLKLPWQSALGIVALSGAIFVILSFTKFRSWVMRSIPSDLRRAVSAGIGAFIAFIGLKEMHIVVTHKATLVT LGDFGDPHVLLGVVGIILTFALYTLKIRGSFIIAVLITSILAWVLKLAPYPSEFFSMPASIGPIAFQLDFKGIFFDASGA FTLALVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELEKTLEADAVASLGSAVVGVSTTTAFIESASGVEEGGR TGLTAVFTGLFFVLTLFCLPLLKAIPSNAIYPVLVVVGVLMFSVLEGVNFKDMAISVSTFLTVVMMPLTFSIADGLAFGF LSYSIIKLVQKDFKALNSGIIILCIISVSVFIFR
Specific function: Unknown
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082309, Length=427, Percent_Identity=37.9391100702576, Blast_Score=285, Evalue=6e-78, Organism=Escherichia coli, GI1790150, Length=424, Percent_Identity=37.9716981132075, Blast_Score=282, Evalue=3e-77, Organism=Escherichia coli, GI1790499, Length=432, Percent_Identity=30.787037037037, Blast_Score=213, Evalue=2e-56, Organism=Escherichia coli, GI48994909, Length=424, Percent_Identity=30.188679245283, Blast_Score=199, Evalue=3e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 46737; Mature: 46606
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFFKLKEHNTNIATEFRAGLTTFITMIYIVPLNALILSQANMPYEALLSATAIITILSS CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VFNGLWANTPIAMSVGLGLSAYFSFGLVQGLKLPWQSALGIVALSGAIFVILSFTKFRSW HHHHHHCCCCHHEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VMRSIPSDLRRAVSAGIGAFIAFIGLKEMHIVVTHKATLVTLGDFGDPHVLLGVVGIILT HHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECEEEEEECCCCCHHHHHHHHHHHHH FALYTLKIRGSFIIAVLITSILAWVLKLAPYPSEFFSMPASIGPIAFQLDFKGIFFDASG HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECEEEEECCC AFTLALVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELEKTLEADAVASLGSAV CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH VGVSTTTAFIESASGVEEGGRTGLTAVFTGLFFVLTLFCLPLLKAIPSNAIYPVLVVVGV HCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LMFSVLEGVNFKDMAISVSTFLTVVMMPLTFSIADGLAFGFLSYSIIKLVQKDFKALNSG HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IIILCIISVSVFIFR HHHHHHHHHHHHHCC >Mature Secondary Structure GFFKLKEHNTNIATEFRAGLTTFITMIYIVPLNALILSQANMPYEALLSATAIITILSS CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VFNGLWANTPIAMSVGLGLSAYFSFGLVQGLKLPWQSALGIVALSGAIFVILSFTKFRSW HHHHHHCCCCHHEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VMRSIPSDLRRAVSAGIGAFIAFIGLKEMHIVVTHKATLVTLGDFGDPHVLLGVVGIILT HHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECEEEEEECCCCCHHHHHHHHHHHHH FALYTLKIRGSFIIAVLITSILAWVLKLAPYPSEFFSMPASIGPIAFQLDFKGIFFDASG HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECEEEEECCC AFTLALVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELEKTLEADAVASLGSAV CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH VGVSTTTAFIESASGVEEGGRTGLTAVFTGLFFVLTLFCLPLLKAIPSNAIYPVLVVVGV HCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LMFSVLEGVNFKDMAISVSTFLTVVMMPLTFSIADGLAFGFLSYSIIKLVQKDFKALNSG HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC IIILCIISVSVFIFR HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]