Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15645583

GI number: 15645583

Start: 1026448

End: 1026735

Strand: Reverse

Name: Not Available

Synonym: HP0967

Alternate gene names: NA

Gene position: 1026735-1026448 (Counterclockwise)

Preceding gene: 15645584

Following gene: 15645582

Centisome position: 61.56

GC content: 37.15

Gene sequence:

>288_bases
ATGTATGCTGTAACTTTTGATCTTGACACCAATTGCTTGAATGAAAACGCAGTGAATCTCTCAAAAGTTTATTCTGATAT
TCGTAAGTTCATGGAACAACATGGCTTTAAATGGCAACAAGGTAGCGTGTATTTTGGCGATGAGACCATCAACGCTGTTA
CTTGCGTCGCTACGGTGCAAATTTTAGCCAAGCAAATACCAAGTTTTGCGGTTTGTGTTAAAGATGTGAGGATGTTAAAA
ATAGAAGAAAACAACGATTTAATGCCGGCTATCAAGATTGTTTTATGA

Upstream 100 bases:

>100_bases
ATTGTTTTATTCTCAAACGCATGGGTTGTAAAACGCATGGGTTATCAAACGAAATTCTAAGTAAAAACATGCTATAACAC
AAACCAATAAAGGAGTTAAA

Downstream 100 bases:

>100_bases
AATTGAGTATAATGAGAGCCATTAAATGGTGCTAGGAGTTTGTAATGATGATTATTCTTAAAAATTCGCTTTCTCTCTCT
CTCTCTCTCTAGTCAGCCGC

Product: virulence associated protein D (vapD)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQILAKQIPSFAVCVKDVRMLK
IEENNDLMPAIKIVL

Sequences:

>Translated_95_residues
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQILAKQIPSFAVCVKDVRMLK
IEENNDLMPAIKIVL
>Mature_95_residues
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQILAKQIPSFAVCVKDVRMLK
IEENNDLMPAIKIVL

Specific function: Unknown

COG id: COG3309

COG function: function code S; Uncharacterized virulence-associated protein D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VAD2_HELPY (O25620)

Other databases:

- EMBL:   AE000511
- PIR:   G64640
- RefSeq:   NP_207759.1
- GeneID:   899500
- GenomeReviews:   AE000511_GR
- KEGG:   hpy:HP0967
- NMPDR:   fig|85962.1.peg.956
- TIGR:   HP_0967
- HOGENOM:   HBG495030
- OMA:   RMLRIEE
- ProtClustDB:   CLSK496793
- GO:   GO:0009405
- InterPro:   IPR016368
- InterPro:   IPR019199
- PIRSF:   PIRSF002882

Pfam domain/function: PF09827 CRISPR_Cas2

EC number: NA

Molecular weight: Translated: 10778; Mature: 10778

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQ
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHH
ILAKQIPSFAVCVKDVRMLKIEENNDLMPAIKIVL
HHHHHCCHHHHHHHHHHEEEECCCCCCCHHEEEEC
>Mature Secondary Structure
MYAVTFDLDTNCLNENAVNLSKVYSDIRKFMEQHGFKWQQGSVYFGDETINAVTCVATVQ
CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHH
ILAKQIPSFAVCVKDVRMLKIEENNDLMPAIKIVL
HHHHHCCHHHHHHHHHHEEEECCCCCCCHHEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185