| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645514
GI number: 15645514
Start: 947580
End: 949706
Strand: Reverse
Name: Not Available
Synonym: HP0896
Alternate gene names: NA
Gene position: 949706-947580 (Counterclockwise)
Preceding gene: 15645516
Following gene: 15645513
Centisome position: 56.94
GC content: 43.54
Gene sequence:
>2127_bases ATGAAAAAAACCCTTTTACTCTCTCTCTCTCTCTCTCTCTCGTTTTTGCTCCACGCTGAAGACGACGGCTTTTACACAAG CGTGGGCTATCAAATCGGTGAAGCCGCTCAAATGGTGAAAAACACCAAAGGCATTCAAGAGCTTTCAGACAATTATGAAA AGCTGAACAATCTTTTGAATAATTACAGCACCCTAAACACCCTTATCAAATTGTCCGCTGATCCGAGCGCGATTAACGAC GCAAGGGATAATCTAGGCTCAAGCTCTAGGAATTTGCTTGATGTCAAAACCAATTCCCCCGCGTATCAAGCCGTGCTTTT AGCACTCAATGCTGCAGTGGGGTTGTGGCAAGTTACAAGCTACGCTTTTACTGCTTGTGGTCCTGGCAGTAACGAGAATG CGAATGGAGGGATCCAAACTTTTAATAATGTGCCAGGACAAGATACGACGACCATCACTTGCAATTCGTATTATGAGCCA GGACATGGTGGGCCTATATCCACTGCAAATTATGCGAAAATCAATCAAGCCTATCAAATCATCCAAAAGGCTTTGACAGC CAATGGAGCTAATGGAGATGGGGTCCCCGTTTTAAGCAACACCACTACAAAACTTGATTTCACTATCAATGGAGACAAAA GAACGGGGGGCAAACCAAATACACCTGAAAAGTTCCCATGGAGTGATGGGAAATATATTCACACCCAATGGATTAACACA ATAGTAACACCAACAGAAACAAATATCAACACAGAAAATAACGCTCAAGAGCTTTTAAAACAAGCGAGCATCATTATCAC TACCCTAAATGAGGCATGCCCAAACTTCCAAAATGGTGGTAGAAGTTATTGGCAAGGGATAAGCGGCAATGGGACAATGT GCGGGATGTTTAAGAATGAAATCAGCGCGATCCAAGGCATGATCGCTAACGCTCAAGAAGCTGTCGCGCAAAGCAAAATC GTTAGTGAAAACGCGCAAAATCAAAACAACTTGGATACTGGAAAACCATTCAACCCTTACACGGACGCCAGCTTTGCGCA AAGCATGCTCAAAAACGCTCAAGCGCAAGCAGAGATTTTAAACCAAGCCGAACAAGTAGTAAAAAACTTTGAAAAAATCC CTACAGCCTTTGTATCAGACTCTTTAGGGGTGTGTTATGAAGTGCAAGGGGGTGAGCGTAGGGGCACCAATCCAGGTCAG GTAACTTCTAACACTTGGGGAGCCGGTTGCGCGTATGTGAAACAAACCATAACGAATTTAGACAACAGCATCGCTCACTT TGGCACTCAAGAGCAGCAGATACAGCAAGCCGAAAACATCGCTGACACTCTAGTGAATTTCAAATCTAGATACAGCGAAT TAGGCAACACCTATAACAGCATCACCACCGCGCTCTCCAAAGTCCCTAACGCGCAAAGCTTGCAAAACGTGGTGAGCAAA AAGAATAACCCCTATAGCCCTCAAGGCATAGAGACCAATTACTACCTCAATCAAAATTCTTACAACCAAATCCAAACCAT CAACCAAGAACTAGGGCGTAACCCCTTTAGGAAAGTGGGCATCGTCAATTCTCAAACCAACAATGGTGCCATGAATGGGA TCGGTATTCAGGTGGGCTATAAGCAATTCTTTGGCCAAAAAAGAAAATGGGGCGCTAGGTATTACGGCTTTTTTGACTAC AACCATGCGTTCATTAAATCCAGCTTCTTCAACTCGGCTTCTGATGTGTGGACTTATGGTTTTGGAGCGGACGCTCTTTA TAACTTCATCAACGATAAAGCCACCAATTTCTTAGGCAAAAACAACAAGCTTTCCGTGGGGCTTTTTGGAGGGATTGCGT TAGCGGGCACTTCATGGCTTAATTCTGAGTATGTGAATTTAGCCACCGTGAATAACGTCTATAACGCTAAAATGAATGTG GCGAATTTCCAATTCTTATTCAATATGGGAGTGAGGATGAATTTAGCCAGATCCAAGAAAAAAGGCAGCGATCATGCGGC TCAGCATGGGATTGAACTAGGGCTTAAAATCCCCACCATCAACACGAACTATTATTCTTTCATGGGGGCTGAACTCAAAT ACAGAAGGCTTTATAGCGTGTATTTGAATTATGTGTTCGCTTACTAA
Upstream 100 bases:
>100_bases AAAAAAAAAAAACGATTTTATGCTATATTAACGAAATCTTGTGATAAGATCTTATTCTTTTAAAAGACTTATCTAACCAT TTTAATTTCAAGGAGAAAAC
Downstream 100 bases:
>100_bases GCTTTTTGTGAAACTCCCTTTTTAAGGGGTTTTTTTTTGAACTCTCTTTTTAAATTCTCTTTTTAAAGAGATTTCTTTTT TTTAAGCTTTTTTTTGAATT
Product: outer membrane protein (omp19)
Products: NA
Alternate protein names: Outer Membrane Protein HorA; Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein(Omp4) HopW Protein SabB; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Protein Adhesin; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Protein Omp; Outer Membrane Function; Outer Membrane Protein HorK; Outer Membrane Protein HorF; Outer Membrane Protein HopB; Adhesin; Outer Membrane Protein HopE; Outer Membrane Protein HorL; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HorB; Outer Membrane Protein HopF; Outer Membrane Protein HopG
Number of amino acids: Translated: 708; Mature: 708
Protein sequence:
>708_residues MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQELSDNYEKLNNLLNNYSTLNTLIKLSADPSAIND ARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTSYAFTACGPGSNENANGGIQTFNNVPGQDTTTITCNSYYEP GHGGPISTANYAKINQAYQIIQKALTANGANGDGVPVLSNTTTKLDFTINGDKRTGGKPNTPEKFPWSDGKYIHTQWINT IVTPTETNINTENNAQELLKQASIIITTLNEACPNFQNGGRSYWQGISGNGTMCGMFKNEISAIQGMIANAQEAVAQSKI VSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEILNQAEQVVKNFEKIPTAFVSDSLGVCYEVQGGERRGTNPGQ VTSNTWGAGCAYVKQTITNLDNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSK KNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY NHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNV ANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
Sequences:
>Translated_708_residues MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQELSDNYEKLNNLLNNYSTLNTLIKLSADPSAIND ARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTSYAFTACGPGSNENANGGIQTFNNVPGQDTTTITCNSYYEP GHGGPISTANYAKINQAYQIIQKALTANGANGDGVPVLSNTTTKLDFTINGDKRTGGKPNTPEKFPWSDGKYIHTQWINT IVTPTETNINTENNAQELLKQASIIITTLNEACPNFQNGGRSYWQGISGNGTMCGMFKNEISAIQGMIANAQEAVAQSKI VSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEILNQAEQVVKNFEKIPTAFVSDSLGVCYEVQGGERRGTNPGQ VTSNTWGAGCAYVKQTITNLDNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSK KNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY NHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNV ANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY >Mature_708_residues MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQELSDNYEKLNNLLNNYSTLNTLIKLSADPSAIND ARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTSYAFTACGPGSNENANGGIQTFNNVPGQDTTTITCNSYYEP GHGGPISTANYAKINQAYQIIQKALTANGANGDGVPVLSNTTTKLDFTINGDKRTGGKPNTPEKFPWSDGKYIHTQWINT IVTPTETNINTENNAQELLKQASIIITTLNEACPNFQNGGRSYWQGISGNGTMCGMFKNEISAIQGMIANAQEAVAQSKI VSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEILNQAEQVVKNFEKIPTAFVSDSLGVCYEVQGGERRGTNPGQ VTSNTWGAGCAYVKQTITNLDNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSK KNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY NHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNV ANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77693; Mature: 77693
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQELSDNYEKLNNLLN CCCEEEEEEECEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYSTLNTLIKLSADPSAINDARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTS HHHHHHHHEEECCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH YAFTACGPGSNENANGGIQTFNNVPGQDTTTITCNSYYEPGHGGPISTANYAKINQAYQI HHEEECCCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH IQKALTANGANGDGVPVLSNTTTKLDFTINGDKRTGGKPNTPEKFPWSDGKYIHTQWINT HHHHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH IVTPTETNINTENNAQELLKQASIIITTLNEACPNFQNGGRSYWQGISGNGTMCGMFKNE EECCCCCCCCCCCCHHHHHHHHHHEEEEHHHHCCCCCCCCHHHHCCCCCCCCEEHHHHHH ISAIQGMIANAQEAVAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEIL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH NQAEQVVKNFEKIPTAFVSDSLGVCYEVQGGERRGTNPGQVTSNTWGAGCAYVKQTITNL HHHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH DNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSK HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHC KNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGY CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCCEEEEECH KQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGK HHHCCCHHCCCCEEEEEECCCHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCCC NNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKK CCCEEEEEECCHHHHCCHHCCCCCEEEEEECCHHHCEECHHHEEEEECCCCEEEHHHHHC KGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY CCCHHHHHCCCEEEEEECEECCCHHHHHCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQELSDNYEKLNNLLN CCCEEEEEEECEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYSTLNTLIKLSADPSAINDARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTS HHHHHHHHEEECCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH YAFTACGPGSNENANGGIQTFNNVPGQDTTTITCNSYYEPGHGGPISTANYAKINQAYQI HHEEECCCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH IQKALTANGANGDGVPVLSNTTTKLDFTINGDKRTGGKPNTPEKFPWSDGKYIHTQWINT HHHHHHCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH IVTPTETNINTENNAQELLKQASIIITTLNEACPNFQNGGRSYWQGISGNGTMCGMFKNE EECCCCCCCCCCCCHHHHHHHHHHEEEEHHHHCCCCCCCCHHHHCCCCCCCCEEHHHHHH ISAIQGMIANAQEAVAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEIL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH NQAEQVVKNFEKIPTAFVSDSLGVCYEVQGGERRGTNPGQVTSNTWGAGCAYVKQTITNL HHHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH DNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSK HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHC KNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGY CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCCEEEEECH KQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGK HHHCCCHHCCCCEEEEEECCCHHHHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCCC NNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKK CCCEEEEEECCHHHHCCHHCCCCCEEEEEECCHHHCEECHHHEEEEECCCCEEEHHHHHC KGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY CCCHHHHHCCCEEEEEECEECCCHHHHHCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA