| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645481
GI number: 15645481
Start: 914534
End: 915205
Strand: Reverse
Name: Not Available
Synonym: HP0862
Alternate gene names: 15645481
Gene position: 915205-914534 (Counterclockwise)
Preceding gene: 15645482
Following gene: 15645480
Centisome position: 54.87
GC content: 39.88
Gene sequence:
>672_bases ATGCCAGCTAGGCAATCTTTTACAGATTTGAAAAACCTGGTTTTGTGCGATATAGGCAACACGCGTATCCATTTTGCACA AAACTATCAGCTCTTTTCAAGCGCTAAAGAAGATTTAAAGCGTTTGGGTATTCAAAAGGAAATTTTTTACATTAGCGTGA ATGAAGAAAATGAAAAAGCCCTTTTGAATTGTTACCCTAACGCTAAAAATATTGCAGGGTTTTTTCATTTAGAAACCGAC TATGTAGGGCTTGGGATAGACCGGCAAATGGCGTGTCTGGCGGTAAATAATGGCGTGGTGGTGGATGCCGGGAGTGCGAT TACGATAGATTTAATCAAAGAGGGCAAGCATTTAGGAGGGTGTATTTTACCCGGTTTAGCCCAATATATTCATGCGTATA AAAAAAGCGCTAAAATTTTAGAGCAACCTTTCAAGGCCTTAGATTCTTTAGAAGTTTTACCTAAAAGCACTAGAGACGCT GTGAATTACGGCATGGTTTTGAGCGTCATTGCTTGTATCCAGCATTTAGCCAAAAATCAAAAAATCTATCTTTGTGGGGG CGATGCGAAGTATTTGAGCGCGTTTTTACCCCATTCTGTTTGCAAGGAGCGTTTGGTTTTTGACGGGATGGAAATCGCTC TTAAAAAAGCAGGGATACTAGAATGCAAATGA
Upstream 100 bases:
>100_bases GCGAGAGAATTTGAACAAAGAGCGAGAGAGCATCAAGAAAGAGATGAAAAAGAGCTTGAAGAAAGAAGAAAAGCTTTAGA AATGAATAAGAAGTAGGCCT
Downstream 100 bases:
>100_bases TGCACAATTTGAGTTTTTTGGGCATGTTTTTAGCCGCTTTGAGCATGTCTTTAGGGCATTGTGTGGGCATGTGTGGGGGG ATTGTGAGCGCGTTCAGTCA
Product: pantothenate kinase
Products: NA
Alternate protein names: PanK-III; Pantothenic acid kinase [H]
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETD YVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGGCILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDA VNYGMVLSVIACIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK
Sequences:
>Translated_223_residues MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETD YVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGGCILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDA VNYGMVLSVIACIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK >Mature_222_residues PARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIAGFFHLETDY VGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGGCILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDAV NYGMVLSVIACIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK
Specific function: Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis [H]
COG id: COG1521
COG function: function code K; Putative transcriptional regulator, homolog of Bvg accessory factor
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type III pantothenate kinase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004619 [H]
Pfam domain/function: PF03309 Bvg_acc_factor [H]
EC number: =2.7.1.33 [H]
Molecular weight: Translated: 24655; Mature: 24524
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA CCCCCHHHHHHHEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCE LLNCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGG EEEECCCCCCCEEEEEEECCEEECCCCCCEEEEEECCCEEEECCCEEEEEEECCCCCCCC CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAKNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK EEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCC >Mature Secondary Structure PARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA CCCCHHHHHHHEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCE LLNCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGG EEEECCCCCCCEEEEEEECCEEECCCCCCEEEEEECCCEEEECCCEEEEEEECCCCCCCC CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAKNQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK EEEEECCCHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA