Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 15645336

GI number: 15645336

Start: 768089

End: 769333

Strand: Reverse

Name: Not Available

Synonym: HP0714

Alternate gene names: 15645336

Gene position: 769333-768089 (Counterclockwise)

Preceding gene: 15645337

Following gene: 15645328

Centisome position: 46.13

GC content: 36.06

Gene sequence:

>1245_bases
ATGGCGATCTTACGCGCAAACCTTAGCCCTAAAAACAAATTAAACGCCACTTTAAAAGGGTGGCTCCCCATTTTACAAAG
CGAGCTTGAAGATTTAGAAGAAGTGTTGAAACAAAACGCTTTAGATAACCCCTTAATCAAAATTGAAAACAAACGCATCA
AAAATTTTAGCGATCGCTTTAGCGCTAAAAAGAGTAGCGATCATTTAGAAAATTTCGCAACCGCATCTAAAAGCCTTTTT
GAAACCTTAGAAGCTCAAATCATTCCCCCTCTCTTTCCTACTGAAACCTCTCAAAAAATCGCTATGGATATTATCAGCGG
GTTGAATAATGAGGGGTATTTTGAAGAAAATATTGAAGAAAGGGCTAGAATTTTAGGGGTAGAGAGCGAAGTTTATGAAA
AAGTGCGCAAGCGTTTTAGTTACCTTAATCCCGCTGGCATTGGTGCTAAAGATGTGAAAGAGAGCTTTTTATTCCAGTTA
GAGAGTAGGGAATTAGACGATAATGAGCTTTATGAAGAAACGCGAAAAATCATTTTAAATTTAGAAAAACACCATGAATT
TTCTAAAGATTTTTATTATGAAAAGGCTTTAAAGATTTTAAAATCCTTTAAAAACCCCCCAGCCATTGAGTTTTTAGAAA
AAGAAATAGAAGTCATTCCTGAACTTTTTATTGTAGAAGTGGATAATGGAATCATCGTGCGTTTGAATGATGAGAGCTAC
CCGACAATCAGTTTGGAAGAAAATCGCTTTAAGGATAGCGGCTATTTAAAAGAAAAATTAAAAGAGGCTAAAGATTTGAT
TGATGCGCTAAATTTGAGAAAAGCCACGATTTATAAAATCGGTCTGATGCTTTTAGAGTATCAATACGATTTTTTTAAGG
GTAAGGAATTACGCCCTTTAAAGCTATTAGATTTAGCCAATGAGTTTAACCACTCTGTAAGCACGATTTCAAGGGCCATT
TCTAATAAATATTTGGCATGCGAAAGGGGGGTTTTCCCCATTAAGCATTTCTTTAGCATCGCCTTAGACAATAGCGAGAC
TTCAAACGCTGTGATTAAAGACTATCTTTTAGAATTGATCAAAAACGAAGACAAAAAAGAGCCTTTGAGCGACGCTAAGA
TTTTAGAACTCATTGAAGAAAAATTCCATTTGAAAATGGTAAGAAGAACGATCACCAAATACCGCCAACTGCTCAACATC
GCCTCTTCAAGCGAAAGGAAAAGGCTCTATTTGATGCGCGCTTGA

Upstream 100 bases:

>100_bases
TCAAAAGCGGCACGCTTCTAGCAAGCGGGAACGCTAATGAAATTTATGAAAACGCTTTGGTGCGTAAGTATTATTTAGGG
GAAAATTTTAAGGTATAGAC

Downstream 100 bases:

>100_bases
AAACCATGATTTTAGGGCTTATTCTTATTGAGTATCATTTGTCCTTGTATGCGTGTGAGTTCAAACTCTTGGGATACTTT
GGCGAGTTGGTATAAGCTTT

Product: RNA polymerase factor sigma-54

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MAILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRFSAKKSSDHLENFATASKSLF
ETLEAQIIPPLFPTETSQKIAMDIISGLNNEGYFEENIEERARILGVESEVYEKVRKRFSYLNPAGIGAKDVKESFLFQL
ESRELDDNELYEETRKIILNLEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFIVEVDNGIIVRLNDESY
PTISLEENRFKDSGYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKELRPLKLLDLANEFNHSVSTISRAI
SNKYLACERGVFPIKHFFSIALDNSETSNAVIKDYLLELIKNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNI
ASSSERKRLYLMRA

Sequences:

>Translated_414_residues
MAILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRFSAKKSSDHLENFATASKSLF
ETLEAQIIPPLFPTETSQKIAMDIISGLNNEGYFEENIEERARILGVESEVYEKVRKRFSYLNPAGIGAKDVKESFLFQL
ESRELDDNELYEETRKIILNLEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFIVEVDNGIIVRLNDESY
PTISLEENRFKDSGYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKELRPLKLLDLANEFNHSVSTISRAI
SNKYLACERGVFPIKHFFSIALDNSETSNAVIKDYLLELIKNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNI
ASSSERKRLYLMRA
>Mature_413_residues
AILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRFSAKKSSDHLENFATASKSLFE
TLEAQIIPPLFPTETSQKIAMDIISGLNNEGYFEENIEERARILGVESEVYEKVRKRFSYLNPAGIGAKDVKESFLFQLE
SRELDDNELYEETRKIILNLEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFIVEVDNGIIVRLNDESYP
TISLEENRFKDSGYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKELRPLKLLDLANEFNHSVSTISRAIS
NKYLACERGVFPIKHFFSIALDNSETSNAVIKDYLLELIKNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIA
SSSERKRLYLMRA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1508

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-54 factor family [H]

Homologues:

Organism=Escherichia coli, GI1789594, Length=346, Percent_Identity=30.0578034682081, Blast_Score=146, Evalue=3e-36,

Paralogues:

None

Copy number: 70 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000394
- InterPro:   IPR007046
- InterPro:   IPR007634 [H]

Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]

EC number: NA

Molecular weight: Translated: 48173; Mature: 48042

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRF
CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHCHHHHH
SAKKSSDHLENFATASKSLFETLEAQIIPPLFPTETSQKIAMDIISGLNNEGYFEENIEE
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
RARILGVESEVYEKVRKRFSYLNPAGIGAKDVKESFLFQLESRELDDNELYEETRKIILN
HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFIVEVDNGIIVRLNDESY
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCC
PTISLEENRFKDSGYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKELRPL
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
KLLDLANEFNHSVSTISRAISNKYLACERGVFPIKHFFSIALDNSETSNAVIKDYLLELI
HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKRLYLMRA
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure 
AILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRF
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHCHHHHH
SAKKSSDHLENFATASKSLFETLEAQIIPPLFPTETSQKIAMDIISGLNNEGYFEENIEE
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
RARILGVESEVYEKVRKRFSYLNPAGIGAKDVKESFLFQLESRELDDNELYEETRKIILN
HHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFIVEVDNGIIVRLNDESY
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCC
PTISLEENRFKDSGYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKELRPL
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
KLLDLANEFNHSVSTISRAISNKYLACERGVFPIKHFFSIALDNSETSNAVIKDYLLELI
HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
KNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKRLYLMRA
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]