| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645170
GI number: 15645170
Start: 575155
End: 578106
Strand: Reverse
Name: Not Available
Synonym: HP0544
Alternate gene names: 15645170
Gene position: 578106-575155 (Counterclockwise)
Preceding gene: 15645171
Following gene: 15645169
Centisome position: 34.66
GC content: 36.38
Gene sequence:
>2952_bases GTGTTTGTGGCAAGCAAACAAGCTGACGAACAAAAAAAGCTAGTCATAGAGCAAGAGGTTCAAAAGCGCCAATTTAAAAA AATAGAAGAACTTAAAGCAGACATGCAAAAGGGTGTCAATCCCTTTTTTAAAGTCTTGTTTGATGGGGGGAATAGGTTGT TTGGTTTCCCTGAAACTTTCATTTATTCCTCTATATTTATATTGTTTGTAACAATTGTACTATCTGTTATTCTTTTTCAA GCCTATGAACCTGTTTTGATTGTAGCGATTGTTATTGTGCTTGTAGCTCTTGGATTCAAGAAAGATTATAGGCTTTATCA AAGAATGGAGCGAGCGATGAAATTTAAAAAACCTTTTTTGTTTAAGGGCGTGAAAAACAAAGCGTTCATGAGCATTTTTT CCATGAAGCCTAGTAAAGAAATGGCTAATGACATCCACTTAAATCCAAACAGAGAAGACAGGCTTGTGAGCGCTGCAAAC TCCTATCTAGCGAATAACTATGAATGTTTTTTAGATGATGGGGTGATCCTTACTAACAACTATTCTCTTTTAGGCACAAT CAAATTGGGGGGCATTGATTTTTTAACCACTTCCAAAAAAGATCTCATAGAGTTACACGCTTCTATTTATAGCGTTTTTA GGAATTTTGTTACCCCTGAATTCAAATTCTATTTTCACACTGTTAAAAAGAAAATCGTTATTGATGAAACCAATAGGGAC TATAGTCTTATTTTTTCTAATGATTTCATGCGAGCCTATAATGAGAAGCAAAAGAGAGAAAGTTTTTATGATATTAGTTT TTATCTCACCATAGAGCAAGATTTATTAGACACTCTCAATGAACCCGTTATGAATAAAAAGCATTTTGCAGACAATAATT TTGAAGAGTTTCAAAGGATTATTAGAGCCAAGCTTGAAAACTTCAAGGATAGGATAGAGCTCATAGAAGAGCTATTGAGT AAATACCACCCCATTAGATTAAAAGAATACACTAAAGATGGCGTTATTTACTCCAAACAATGCGAGTTTTATAATTTCCT TGTGGGAATGAATGAAGCCCCTTTTATTTGCAACAGAAAAGACTTGTATCTCAAGGAAAAAATGCATGGTGGGGTGAAAG AAGTTTATTTTGCCAATAAGCATGGAAAAATCTTAAATGACGATTTGAGTGAAAAATATTTTAGCGCTATTGAGATTAGT GAATACGCCCCTAAATCACAAAGCGATTTGTTTGATAAAATCAACGCCCTAGACAGCGAATTTATTTTCATGCATGCTTA TTCGCCTAAAAACTCACAGGTTTTAAAGGACAAACTAGCTTTCACCTCTAGAAGAATTATTATTAGTGGAGGCTCTAAAG AGCAGGGCATGACTTTAGGTTGCTTGAGCGAATTAGTGGGTAATGGTGATATTACGCTAGGCAGTTATGGTAATTCTTTA GTGTTGTTTGCTGATAGCTTTGAAAAAATGAAACAAAGCGTTAAGGAATGCGTCTCTAGTCTTAACGCTAAAGGTTTTTT AGCCAACGCAGCGACTTTCTCTATGGAAAATTACTTTTTCGCCAAACATTGCTCTTTTATCACGCTTCCTTTTATTTTTG ATGTAACTTCTAATAATTTTGCTGATTTCATCGCTATGAGGGCTATGAGTTTTGATGGCAATCAGGAGAATAACGCTTGG GGCAATAGTGTGATGACGCTAAAAAGCGAGATCAATTCGCCTTTTTATCTGAACTTCCACATGCCTACTGATTTTGGTTC AGCTTCAGCAGGACACACTTTGATACTTGGCTCAACCGGTTCAGGTAAGACAGTGTTTATGTCAATGACCTTGAACGCTA TGGGGCAATTTGTTCACAATTTTCCTGCTAATGTCAGCAAAGACAAGCAAAAGCTCACTATGGTTTATATGGATAAAGAT TATGGCGCTTATGGGAATATTGTCGCAATGGGTGGGGAGTATGTCAAGATTGAGCTAGGGACAGATACAGGATTAAATCC TTTTGCTTGGGCGGCTTGTGTGCAAAAAACAAATGCAACAATGGAGCAAAAACAAACAGCTATTTCTGTTGTCAAAGAGC TTGTGAAAAACTTAGCAACCAAAAGCGATGAAAAAGATGAGAATGGCAACAGCATCTCTTTTAGCCTAGCAGATTCTAAT ACGCTTGCAGCGGCAGTAACCAACCTTATCACAGGAGATATGAACCTAGATTATCCCATCACTCAACTTATTAATGCTTT CGGGAAAGACCACAATGATCCTAATGGGCTTGTCGCGCGATTAGCACCTTTTTGCAAATCAACCAATGGTGAATTTCAAT GGCTTTTTGATAATAAAGCAACGGATCGCTTAGATTTTTCAAAAACGATTATTGGCGTTGATGGGTCAAGTTTCTTAGAC AATAATGATGTTTCGCCCTTTATTTGTTTTTACCTTTTCGCTCGTATCCAAGAGGCAATGGATGGGCGTAGATTTGTCTT AGATATTGATGAAGCTTGGAAATATTTAGGCGATCCAAAGGTCGCTTATTTTGTAAGAGACATGCTAAAAACTGCAAGGA AAAGAAACGCTATTGTCAGACTTGCGACTCAAAGCATCACTGATCTTTTGGCTTGCCCTATTGCTGATACGATTAGAGAA CAATGCCCTACAAAGATTTTTTTGAGAAACGATGGGGGCAATCTTTCTGATTACCAAAGATTGGCTAATGTTACAGAAAA AGAATTTGAAATCATCACTAAGGGACTAGATAGGAAAATTCTCTACAAACAGGATGGAAGCCCTAGCGTTATCGCTAGTT TTAATTTGAGGGGCATTCCTAAAGAATATTTGAAAATTTTATCCACAGATACTGTATTTGTCAAAGAAATTGACAAGATT ATCCAAAACCATAGTATCATAGATAAATATCAGGCCTTGAGGCAAATGTATCAACAAATAAAGGAGTATTAA
Upstream 100 bases:
>100_bases ATGACCCTAATGATCTTTTGAAACATATTAGCACCGTAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCG GTATATCTATAAAGAGAGGG
Downstream 100 bases:
>100_bases AATGAAACAAAGTTTGCGCGAACAAAAATTATTGAAAATTTTAGAAAATGATGTCTTGACGATTTTGGATAGTTTTTCTA ATTATCTTTTTGAACTGAGA
Product: cag pathogenicity island protein (cag23)
Products: NA
Alternate protein names: Protein picB [H]
Number of amino acids: Translated: 983; Mature: 983
Protein sequence:
>983_residues MFVASKQADEQKKLVIEQEVQKRQFKKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQ AYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAAN SYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRD YSLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLS KYHPIRLKEYTKDGVIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEIS EYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSL VLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAW GNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFVHNFPANVSKDKQKLTMVYMDKD YGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSN TLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLD NNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIRE QCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKI IQNHSIIDKYQALRQMYQQIKEY
Sequences:
>Translated_983_residues MFVASKQADEQKKLVIEQEVQKRQFKKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQ AYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAAN SYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRD YSLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLS KYHPIRLKEYTKDGVIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEIS EYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSL VLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAW GNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFVHNFPANVSKDKQKLTMVYMDKD YGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSN TLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLD NNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIRE QCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKI IQNHSIIDKYQALRQMYQQIKEY >Mature_983_residues MFVASKQADEQKKLVIEQEVQKRQFKKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQ AYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAAN SYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRD YSLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLS KYHPIRLKEYTKDGVIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEIS EYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSL VLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAW GNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFVHNFPANVSKDKQKLTMVYMDKD YGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSN TLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLD NNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIRE QCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKI IQNHSIIDKYQALRQMYQQIKEY
Specific function: Involved in DNA transfer. Required for induction of IL-8 in gastric epithelial cells [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To A.tumefaciens virB4 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 112022; Mature: 112022
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFVASKQADEQKKLVIEQEVQKRQFKKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEECCCCHHH IYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH FKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNN HCCCCCHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEECC YSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRD CEEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCC YSLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRI EEEEEECHHHHHHHHHHHHCCEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHH IRAKLENFKDRIELIEELLSKYHPIRLKEYTKDGVIYSKQCEFYNFLVGMNEAPFICNRK HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCHHHHHEECCCCCCCEECCC DLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSE CHHHHHHHCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC FIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSL EEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCEE VLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNF EEEECHHHHHHHHHHHHHHHCCCCCEEECHHHHHHCCCCHHHCCCEEEEEEEEEECCCCH ADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTG HHHHHHHHHCCCCCCCCCCCCCHHEEEHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCC SGKTVFMSMTLNAMGQFVHNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELG CCCEEEEEEEHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCEEEEEEEC TDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSN CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC TLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKA HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC TDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPK CCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCH VAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQR HHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCHHHHHH LANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKI HHHCHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHH IQNHSIIDKYQALRQMYQQIKEY HHCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFVASKQADEQKKLVIEQEVQKRQFKKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEECCCCHHH IYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFL HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH FKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNN HCCCCCHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEECC YSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRD CEEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCC YSLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRI EEEEEECHHHHHHHHHHHHCCEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHHH IRAKLENFKDRIELIEELLSKYHPIRLKEYTKDGVIYSKQCEFYNFLVGMNEAPFICNRK HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCHHHHHEECCCCCCCEECCC DLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSE CHHHHHHHCCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC FIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSL EEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCEE VLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNF EEEECHHHHHHHHHHHHHHHCCCCCEEECHHHHHHCCCCHHHCCCEEEEEEEEEECCCCH ADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTG HHHHHHHHHCCCCCCCCCCCCCHHEEEHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCC SGKTVFMSMTLNAMGQFVHNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELG CCCEEEEEEEHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCEEEEEEEC TDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSN CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC TLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKA HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC TDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPK CCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCH VAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQR HHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCHHHHHH LANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKI HHHCHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHH IQNHSIIDKYQALRQMYQQIKEY HHCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]