| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15644945
GI number: 15644945
Start: 331854
End: 334091
Strand: Reverse
Name: Not Available
Synonym: HP0317
Alternate gene names: NA
Gene position: 334091-331854 (Counterclockwise)
Preceding gene: 15644946
Following gene: 15644944
Centisome position: 20.03
GC content: 44.64
Gene sequence:
>2238_bases ATGAAAAAACACATCCTTTCATTAGCTTTAGGCTCGCTTTTAGTTTCCACTTTGAGCGCTGAAGACGACGGCTTTTACAC AAGCGTAGGCTATCAGATCGGTGAAGCCGCTCAAATGGTAACAAACACCAAAGGCATCCAACAGCTTTCAGACAATTATG AAAATTTGAACAACCTTTTAACGAGATACAGCACCCTAAACACCCTTATCAAATTGTCCGCTGATCCGAGCGCAATTAAT GCGGTGCGGGAAAATCTGGGCGCGAGCACGAAGAATTTGATCGGCGATAAAGCCAACTCCCCGGCGTATCAAGCCGTGTT TTTAGCGATCAACGCGGCGGTAGGGTTGTGGAATACCATCGGCTATGCGGTCATGTGCGGGAACGGGAACGGCACAGAGA GTGGGCCTGGCAGCGTGATCTTTAATGACCAACCAGGACAGGATTCCACGCAAATTACTTGCAACCGCTTTGAATCAACT GGGCCTGGTAAAAGCATGTCTATTGATGAATTCAAAAAACTCAATGAAGCCTATCAAATCATCCAGCAAGCTTTAAAAAA TCAAAGTGGGTTTCCTGAATTAGGCGGGAACGGCACAAAAGTGAGTGTTAATTACAATTACGAATGCAGACAAACTGCTG ATATCAACGGCGGTGTGTATCAGTTCTGCAAGGCTAAAAATGGTAGTAGTAGCAGTAGTAATGGCGGTAATGGCAGTAGC ACGCAAACAACCGCGACAACCACGCAAGACGGCGTAACGATCACCACTACCTATAATAATAACAAAGCCACCGTCAAATT TGACATCACCAATAACGCTGAACAGCTGTTAAATCAAGCGGCAAACATCATGCAAGTCCTTAATACGCAATGCCCTTTAG TGCGTTCCACGAATAACGAAAACACTCCAGGGGGTGGTCAACCATGGGGTTTAAGCACATCCGGGAATGCGTGCAGCATC TTCCAACAAGAATTTAGCCAGGTTACTAGCATGATCAAAAACGCCCAAGAAATAATCGCGCAAAGCAAAATCGTTAGTGA AAACGCGCAAAATCAAAACAACTTGGATACTGGAAAACCATTCAACCCTTACACGGACGCCAGCTTTGCGCAAAGCATGC TCAAAAACGCTCAAGCGCAAGCAGAGATGTTCAATTTGAGCGAACAAGTGAAAAAGAACTTGGAAGTCATGAAAAACAAC AATAATGTTAACGAGAAATTAGCAGGATTTGGGAAAGAAGAAGTAATGACCAATTTTGTTAGCGCCTTTTTGGCAAGCTG CAAAGATGGTGGCACATTGCCTAATGCAGGGGTTACTTCTAACACTTGGGGGGCGGGTTGCGCGTATGTGGGAGAGACGA TAAGCGCCCTAACCAACAGCATCGCTCACTTTGGCACTCAAGAGCAGCAGATACAGCAAGCCGAAAACATCGCTGACACT CTAGTGAATTTCAAATCTAGATACAGCGAATTAGGCAACACCTATAACAGCATCACCACCGCGCTCTCCAAAGTCCCTAA CGCGCAAAGCTTGCAAAACGTGGTGAGCAAAAAGAATAACCCCTATAGCCCTCAAGGCATAGAGACCAATTACTACCTCA ATCAAAATTCTTACAACCAAATCCAAACCATCAACCAAGAACTAGGGCGTAACCCCTTTAGGAAAGTGGGCATCGTCAAT TCTCAAACCAACAATGGTGCCATGAATGGGATCGGCATTCAGGTGGGCTATAAGCAATTCTTTGGCCAAAAAAGAAAATG GGGCGCTAGGTATTACGGCTTTTTTGATTACAACCATGCGTTCATCAAATCCAGCTTTTTCAACTCGGCTTCTGACGTGT GGACTTATGGTTTTGGAGCGGACGCGCTTTATAACTTCATCAACGATAAAGCCACCAATTTCTTAGGCAAAAACAACAAG CTTTCTTTGGGGCTTTTTGGCGGGATTGCGTTAGCGGGCACTTCATGGCTCAATTCTGAGTACGTGAATTTAGCCACCGT GAATAACGTCTATAACGCTAAAATGAATGTGGCGAATTTCCAATTCTTATTCAATATGGGAGTGAGGATGAATTTAGCCA GATCCAAGAAAAAAGGCAGCGATCATGCAGCTCAGCATGGGATTGAGTTAGGGCTTAAAATCCCCACCATCAACACGAAC TATTATTCCTTTATGGGGGCTGAACTCAAATACAGAAGGCTCTATAGCGTGTATTTGAACTATGTGTTCGCTTACTAA
Upstream 100 bases:
>100_bases CCAAATACATTCTAATAGCAAATGCGTTCTAATGCAAATGCATTCCAATGTATGAAATCCCTAATACTAAATCCAATTTA ATCCAAAAAGGAGAAAAAAC
Downstream 100 bases:
>100_bases GCTTTTTGTGAAACTCCCTTTTTAAGGGGTTTTTTTTTGAACTCTCTTTTTAAATTCTCTTTTTAAAGAGATTTCTTTTT TTTAAGCTTTTTTTTGAATT
Product: outer membrane protein (omp9)
Products: NA
Alternate protein names: Outer Membrane Protein HorA; Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein(Omp4) HopW Protein SabB; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Protein Adhesin; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Protein Omp; Outer Membrane Function; Outer Membrane Protein HorK; Outer Membrane Protein HorF; Outer Membrane Protein HopB; Adhesin; Outer Membrane Protein HopE; Outer Membrane Protein HorL; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HorB; Outer Membrane Protein HopF; Outer Membrane Protein HopG
Number of amino acids: Translated: 745; Mature: 745
Protein sequence:
>745_residues MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYSTLNTLIKLSADPSAIN AVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTIGYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFEST GPGKSMSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNENTPGGGQPWGLSTSGNACSI FQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNN NNVNEKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADT LVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVN SQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNK LSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTN YYSFMGAELKYRRLYSVYLNYVFAY
Sequences:
>Translated_745_residues MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYSTLNTLIKLSADPSAIN AVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTIGYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFEST GPGKSMSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNENTPGGGQPWGLSTSGNACSI FQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNN NNVNEKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADT LVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVN SQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNK LSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTN YYSFMGAELKYRRLYSVYLNYVFAY >Mature_745_residues MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYSTLNTLIKLSADPSAIN AVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTIGYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFEST GPGKSMSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNENTPGGGQPWGLSTSGNACSI FQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNN NNVNEKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADT LVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVN SQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNK LSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTN YYSFMGAELKYRRLYSVYLNYVFAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81163; Mature: 81163
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI HHHHHHHHHEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC GYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDEFKKLNEAYQI CEEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH IQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS HHHHHHCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNE CCEEEEECCCCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCC NTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC FNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTNFV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHH SAFLASCKDGGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADT HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQ HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHH IQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHA HHHHHHHHCCCHHHHCCCEECCCCCCCCCCEEEEECHHHHCCCHHCCCCEEEEEECCCHH FIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSE HHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCHHCCCC YVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTN CEEEEEECCHHHCEECHHHEEEEECCCCEEEHHHHHCCCCHHHHHCCCEEEEEECEECCC YYSFMGAELKYRRLYSVYLNYVFAY HHHHHCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI HHHHHHHHHEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC GYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDEFKKLNEAYQI CEEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH IQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS HHHHHHCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNE CCEEEEECCCCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCC NTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC FNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTNFV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHH SAFLASCKDGGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADT HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQ HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHH IQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHA HHHHHHHHCCCHHHHCCCEECCCCCCCCCCEEEEECHHHHCCCHHCCCCEEEEEECCCHH FIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSE HHHHHHCCCCCHHEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCHHCCCC YVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTN CEEEEEECCHHHCEECHHHEEEEECCCCEEEHHHHHCCCCHHHHHCCCEEEEEECEECCC YYSFMGAELKYRRLYSVYLNYVFAY HHHHHCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA