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Identifier: 15644943

GI number: 15644943

Start: 330588

End: 330872

Strand: Reverse

Name: Not Available

Synonym: HP0315

Alternate gene names: 15644943

Gene position: 330872-330588 (Counterclockwise)

Preceding gene: 15644944

Following gene: 15644941

Centisome position: 19.84

GC content: 33.68

Gene sequence:

>285_bases
ATGTATGCTTTAGCGTTTGATTTAAAGATTGAGATTTTAAAAAAAGAATACGGAGAACCCTACAATAAAGCCTATGATGA
TTTAAGGCAAGAATTAGAGCTATTAGGGTTTGAATGGACTCAAGGGAGCGTTTATGTTAATTATTCTAAAGAAAACACTC
TAGCACAAGTCTATAAAGCGATCAATAAACTCTCTCAAATTGAGTGGTTTAAAAAGTCTGTTAGGGATATTAGAGCGTTT
AAGGTGGAGGACTTTAGCGATTTTACTGAGATTGTGAAATCCTAG

Upstream 100 bases:

>100_bases
GCCATGAGAGATGCGTTAAATGGAATTAATCTCACTCAAATTGATAGTTTAGATGATTTTACAAACGAGTTAAAAAGAGA
AAATAGTAAAGGTTTTGAAA

Downstream 100 bases:

>100_bases
TGTTTAGCCAAATTTTTAAAATTTTTGGCACTTATAGAGTGGAAAGCAACGCTTTTTTAGTAAGACTAGGCAGTCATAGC
GAGCTGTTTTGTGAAAACTA

Product: virulence associated protein D (vapD)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MYALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAF
KVEDFSDFTEIVKS

Sequences:

>Translated_94_residues
MYALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAF
KVEDFSDFTEIVKS
>Mature_94_residues
MYALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAF
KVEDFSDFTEIVKS

Specific function: Unknown

COG id: COG3309

COG function: function code S; Uncharacterized virulence-associated protein D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VAPD_HELPY (O05728)

Other databases:

- EMBL:   U94318
- EMBL:   AE000511
- PIR:   C64559
- PIR:   T09450
- RefSeq:   NP_207113.1
- GeneID:   900103
- GenomeReviews:   AE000511_GR
- KEGG:   hpy:HP0315
- TIGR:   HP_0315
- HOGENOM:   HBG495030
- OMA:   EDMANLF
- ProtClustDB:   CLSK2393092
- GO:   GO:0009405
- InterPro:   IPR016368
- InterPro:   IPR019199
- PIRSF:   PIRSF002882

Pfam domain/function: PF09827 CRISPR_Cas2

EC number: NA

Molecular weight: Translated: 11189; Mature: 11189

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKA
CCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
INKLSQIEWFKKSVRDIRAFKVEDFSDFTEIVKS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MYALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKA
CCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
INKLSQIEWFKKSVRDIRAFKVEDFSDFTEIVKS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185