| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15644863
GI number: 15644863
Start: 245098
End: 246165
Strand: Reverse
Name: Not Available
Synonym: HP0235
Alternate gene names: 15644863
Gene position: 246165-245098 (Counterclockwise)
Preceding gene: 15644864
Following gene: 15644858
Centisome position: 14.76
GC content: 41.1
Gene sequence:
>1068_bases ATGGGTGTCAAATTTTTAAAAATATTAGTTTGTGGGTTATTTTTTTGGAGCTTGAACGCCCATTTATGGGGAAAACAAGA CAATAGTTTTTTGGGGGTTGCTGAAAAAGCCTATAAAAGCGGGAATTATTCTAAAGCCACATCTTATTTTAAAAAAGCAT GCAACGATGGGGTGAGTGAAGGTTGCACGCAATTAGGAATCATTTATGAAAACGGGCAAGGCACTAGAATAGATTATAAA AAAGCCCTAGAATATTATAAAACCGCATGCCAGGCTGATGATAGGGAAGGGTGTTTTGGTTTAGGGGGGCTTTATGATGA GGGGTTAGGCACGACTCAAAATTATCAAGAAGCCATTGACGCTTATGCTAAGGCGTGCGTTTTAAAACACCCTGAGAGTT GCTACAATTTAGGCATTATTTATGACCGAAAAATCAAAGGCAATGCCGATCAAGCGGTTACCTACTACCAAAAAAGCTGT AATTTTGATATGGCTAAGGGGTGTTATGTTTTGGGCGTGGCTTATGAAAAAGGCTTTTTAGAAGTCAAACAAAGCAACCA TAAAGCCGTCATCTATTATTTGAAAGCATGCCGATTGGATGATGGGCAGGCTTGTCGCGCGTTAGGGAGTTTGTTTGAAA ATGGCGATGCAGGGCTTGATGAAGATTTTGAAGTGGCGTTTGATTACTTGCAAAAAGCTTGCGGGTTAAACAATTCTGGT GGTTGCGCGAGTTTAGGCTCTATGTATATGTTAGGCAGGTATGTCAAAAAAGATCCCCAAAAGGCTTTTAATTTTTTCAA ACAAGCATGCGATATGGGGAGTGCGGTGAGTTGCTCTAGGATGGGCTTTATGTATTCCCAAGGGGACGCTGTTCCAAAAG ACTTGAGGAAAGCCCTTGATAATTATGAAAGGGGTTGCGATATGGGCGATGAAGTGGGTTGCTTCGCTCTAGCGGGCATG TATTACAACATGAAAGACAAAGAAAACGCCATAATGATTTATGACAAGGGCTGTAAGCTAGGCATGAAACAAGCATGCGA AAACCTCACTAAACTTAGGGGGTATTGA
Upstream 100 bases:
>100_bases AGCCTTAATCAAAGCGCTTGATTTATGCTAAAATGGAGCGTTGCATTTTTGTTTTGATTAAAGAAGGGTTCTAAAAATCA GAATTTAAAAGAAGGTAAAA
Downstream 100 bases:
>100_bases AAATTTAATCAACCCCCTAAATTATCATTGCGTTTGACTCAAAACTTTTCAAAGATTTGGCTCTGTTTTGAAAACCCAAG CAGAAAGCCCCCCCTATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: Cysteine-rich protein E [H]
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MGVKFLKILVCGLFFWSLNAHLWGKQDNSFLGVAEKAYKSGNYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYK KALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNADQAVTYYQKSC NFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGM YYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY
Sequences:
>Translated_355_residues MGVKFLKILVCGLFFWSLNAHLWGKQDNSFLGVAEKAYKSGNYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYK KALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNADQAVTYYQKSC NFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGM YYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY >Mature_354_residues GVKFLKILVCGLFFWSLNAHLWGKQDNSFLGVAEKAYKSGNYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKK ALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNADQAVTYYQKSCN FDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGG CASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGMY YNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY
Specific function: May hydrolyze 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives [H]
COG id: COG0790
COG function: function code R; FOG: TPR repeat, SEL1 subfamily
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 8 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI19923669, Length=322, Percent_Identity=27.639751552795, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI151301150, Length=323, Percent_Identity=23.5294117647059, Blast_Score=79, Evalue=7e-15, Organism=Escherichia coli, GI87081769, Length=260, Percent_Identity=25.7692307692308, Blast_Score=82, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17537799, Length=231, Percent_Identity=29.004329004329, Blast_Score=78, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17563256, Length=330, Percent_Identity=24.5454545454545, Blast_Score=75, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6319410, Length=274, Percent_Identity=24.4525547445255, Blast_Score=74, Evalue=4e-14, Organism=Drosophila melanogaster, GI21355295, Length=284, Percent_Identity=27.112676056338, Blast_Score=85, Evalue=9e-17, Organism=Drosophila melanogaster, GI116007256, Length=221, Percent_Identity=28.5067873303167, Blast_Score=72, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006597 - InterPro: IPR011990 [H]
Pfam domain/function: PF08238 Sel1 [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 39399; Mature: 39268
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 8.7 %Cys+Met (Translated Protein) 5.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 8.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVKFLKILVCGLFFWSLNAHLWGKQDNSFLGVAEKAYKSGNYSKATSYFKKACNDGVSE CCHHHHHHHHHHHHHHHHCCEEECCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCHHH GCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAID HHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCHHCCCCCCHHHHHHHH AYAKACVLKHPESCYNLGIIYDRKIKGNADQAVTYYQKSCNFDMAKGCYVLGVAYEKGFL HHHHHHHHCCCHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCC EVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG EECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALD CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCEECCCCCCHHHHHHHHH NYERGCDMGDEVGCFALAGMYYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY HHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure GVKFLKILVCGLFFWSLNAHLWGKQDNSFLGVAEKAYKSGNYSKATSYFKKACNDGVSE CHHHHHHHHHHHHHHHHCCEEECCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCHHH GCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAID HHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCHHCCCCCCHHHHHHHH AYAKACVLKHPESCYNLGIIYDRKIKGNADQAVTYYQKSCNFDMAKGCYVLGVAYEKGFL HHHHHHHHCCCHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCC EVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSG EECCCCCCEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC GCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALD CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHCCEECCCCCCHHHHHHHHH NYERGCDMGDEVGCFALAGMYYNMKDKENAIMIYDKGCKLGMKQACENLTKLRGY HHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]