| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15644655
GI number: 15644655
Start: 21152
End: 22717
Strand: Reverse
Name: Not Available
Synonym: HP0022
Alternate gene names: 15644655
Gene position: 22717-21152 (Counterclockwise)
Preceding gene: 15644658
Following gene: 15644654
Centisome position: 1.36
GC content: 39.97
Gene sequence:
>1566_bases TTGGCATCATTATTCCATCTGAGGTTTTTAAAACCCCTAAGTTGTCTGCAAGCCGGTTTGCTTTATAGCCTTATTTTTGG CGTTTTATACCATTTCCCTTTGTTCGTTTATGTTTATAAAGAAAGCAACCAGGTCAGTTTTATCGCCATGATGGTTGTGG TGCTTTTTTGCGTTAATGGCGCTCTTTTTTTGGCGTTAGGCTTGATCTCTGCTTCTTTGATGCGTTGGAGTGCGATAGTT TTTAGCCTGCTCAATTCCGTTGCTTTCTATTTCATTAGCGCTTATAAGGTGTTTTTAAATAAGAGCATGATGGGTAATGT CTTAAACACCAACACGCATGAAGTTTTAGGCTTTTTGAGCGTCAAATTATTCGTTTTTATCGTTGTTTTTGGGGTGTTGC CTGGCTATGTCATCTATAAAATCCCCCTTAAAAATTCTTCTAAAAAAGCGCCCTTTTTAGCGATCTTGGCGTTAGTGTTT ATCTTTATCGCTAGCGCTTTAGCTAACACTAAAAATTGGCTGTGGTTTGACAAGCATGCGAAATTCATAGGGGGCTTAAT TTTGCCCTTCGCTTATAGCGTGAACGCTTTTAGAGTGAGCGCTCTCAAATTTTTCGCCCCCACCATCAAGCCGCTCCCTC TTTTTTCACCCAATCATTCCCATTCGTTTGTGGTGCTAGTCATTGGCGAAAGCGCTAGGAAACATAATTACGCCCTTTAT GGCTATCAAAAACCCACCACCCCAAGACTAAGCAAGCGTTTAGCCGATAATGAACTCACTCTTTTCAACGCCACTTCTTG CGCCACTTACACGACAGCGAGTTTGGAATGCATTTTAGATTCTTCTTTTAAAAACAACGCTTATGAAAATTTGCCAACTT ACTTGACTAAAGCCGGTATCAAAGTCTTTTGGTATAGCGCGAACGACGGCGAAAAGAATGTTAAGGTTACAAGCTATCTT AAAAACTATGAATTGATTCAAAAATGCCCCAATTGTGAAGCGATCGCTCCTTATGATGAATCTTTACTTTATAATTTGCC TGACCTTTTAAAAGAACACTCTAATGAAAATGTCTTGCTCATCTTACACCTTGCAGGCTCGCATGGCCCAAACTACGACA ACAAAGTGCCTTTAAATTTTAGGGTGTTTAAGCCTTATTGCTCAAGCGCTGATCTGTCTTCTTGCTCCAAAGAAAGCCTG ATTAACGCCTATGACAACACCATTTTTTACAACGACTATCTGCTAGATAAGATCATTAGCATGCTTGAAAACGCCAAGCA GCCCGCCTTAATGATCTATTTAAGCGATCATGGCGAAAGTTTGGGCGAAGAAGCGTTCTATTTGCATGGCATTCCTAAAA GCATCGCCCCCAAAGAACAATACGAGATCCCCTTTATCGTTTATGCTAATGAGCCTTTCAAAGAAAAGCATTCCATCATT CAAACCCAAACCCCCATTAATCAAAATGTGATTTTCCATAGCGTTTTAGGGGTGTTTTTGGATTTTAAAAACCCAAGCGT TGTTTATCGCCCTTCTTTAGATCTGCTTAAACACAAAAAAGAGTAA
Upstream 100 bases:
>100_bases ATGCAACCACCCTAAAAAAAGCACTTTCCACTTTAAATAAACCATAAAATCCCCATACCTACGATATAATCCTAAGATTG ATTGATTTTAAGGGGCGTGT
Downstream 100 bases:
>100_bases AATAACACGCATGAAAAAATTCTTATTTAAACAAAAATTTTGTGAAAGCCTGCCCAAAAGCTTTTCTAAAACTTTGTTAG CGCTCAGTTTGGGCTTGATT
Product: lipid A phosphoethanolamine transferase
Products: NA
Alternate protein names: Polymyxin resistance protein pmrC [H]
Number of amino acids: Translated: 521; Mature: 520
Protein sequence:
>521_residues MASLFHLRFLKPLSCLQAGLLYSLIFGVLYHFPLFVYVYKESNQVSFIAMMVVVLFCVNGALFLALGLISASLMRWSAIV FSLLNSVAFYFISAYKVFLNKSMMGNVLNTNTHEVLGFLSVKLFVFIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVF IFIASALANTKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNHSHSFVVLVIGESARKHNYALY GYQKPTTPRLSKRLADNELTLFNATSCATYTTASLECILDSSFKNNAYENLPTYLTKAGIKVFWYSANDGEKNVKVTSYL KNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESL INAYDNTIFYNDYLLDKIISMLENAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAPKEQYEIPFIVYANEPFKEKHSII QTQTPINQNVIFHSVLGVFLDFKNPSVVYRPSLDLLKHKKE
Sequences:
>Translated_521_residues MASLFHLRFLKPLSCLQAGLLYSLIFGVLYHFPLFVYVYKESNQVSFIAMMVVVLFCVNGALFLALGLISASLMRWSAIV FSLLNSVAFYFISAYKVFLNKSMMGNVLNTNTHEVLGFLSVKLFVFIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVF IFIASALANTKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNHSHSFVVLVIGESARKHNYALY GYQKPTTPRLSKRLADNELTLFNATSCATYTTASLECILDSSFKNNAYENLPTYLTKAGIKVFWYSANDGEKNVKVTSYL KNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESL INAYDNTIFYNDYLLDKIISMLENAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAPKEQYEIPFIVYANEPFKEKHSII QTQTPINQNVIFHSVLGVFLDFKNPSVVYRPSLDLLKHKKE >Mature_520_residues ASLFHLRFLKPLSCLQAGLLYSLIFGVLYHFPLFVYVYKESNQVSFIAMMVVVLFCVNGALFLALGLISASLMRWSAIVF SLLNSVAFYFISAYKVFLNKSMMGNVLNTNTHEVLGFLSVKLFVFIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFI FIASALANTKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNHSHSFVVLVIGESARKHNYALYG YQKPTTPRLSKRLADNELTLFNATSCATYTTASLECILDSSFKNNAYENLPTYLTKAGIKVFWYSANDGEKNVKVTSYLK NYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESLI NAYDNTIFYNDYLLDKIISMLENAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAPKEQYEIPFIVYANEPFKEKHSIIQ TQTPINQNVIFHSVLGVFLDFKNPSVVYRPSLDLLKHKKE
Specific function: Catalyzes the addition of a phosphoethanolamine moiety to the lipid A. The phosphoethanolamine modification is required for resistance to polymyxin [H]
COG id: COG2194
COG function: function code R; Predicted membrane-associated, metal-dependent hydrolase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoethanolamine transferase family. EptA subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082372, Length=488, Percent_Identity=28.4836065573771, Blast_Score=206, Evalue=3e-54, Organism=Escherichia coli, GI87082286, Length=274, Percent_Identity=30.2919708029197, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI87082223, Length=254, Percent_Identity=29.5275590551181, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790392, Length=530, Percent_Identity=23.7735849056604, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787035, Length=277, Percent_Identity=25.9927797833935, Blast_Score=76, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012549 - InterPro: IPR000917 [H]
Pfam domain/function: PF08019 DUF1705; PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 58859; Mature: 58728
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS01037 SBP_BACTERIAL_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLFHLRFLKPLSCLQAGLLYSLIFGVLYHFPLFVYVYKESNQVSFIAMMVVVLFCVNG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCH ALFLALGLISASLMRWSAIVFSLLNSVAFYFISAYKVFLNKSMMGNVLNTNTHEVLGFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VKLFVFIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFIFIASALANTKNWLWFDKHA HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHH KFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNHSHSFVVLVIGESARKHNYALY HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE GYQKPTTPRLSKRLADNELTLFNATSCATYTTASLECILDSSFKNNAYENLPTYLTKAGI ECCCCCCHHHHHHHCCCCEEEEECCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHCCC KVFWYSANDGEKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLL EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHCCHHHHHHCCCCCEEE ILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESLINAYDNTIFYNDYLLDKIIS EEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHCCEEEEHHHHHHHHHH MLENAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAPKEQYEIPFIVYANEPFKEKHSII HHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHE QTQTPINQNVIFHSVLGVFLDFKNPSVVYRPSLDLLKHKKE ECCCCCCCHHHHHHHHHHHEECCCCCEEECCCHHHHHCCCC >Mature Secondary Structure ASLFHLRFLKPLSCLQAGLLYSLIFGVLYHFPLFVYVYKESNQVSFIAMMVVVLFCVNG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCH ALFLALGLISASLMRWSAIVFSLLNSVAFYFISAYKVFLNKSMMGNVLNTNTHEVLGFLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VKLFVFIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFIFIASALANTKNWLWFDKHA HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHH KFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNHSHSFVVLVIGESARKHNYALY HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE GYQKPTTPRLSKRLADNELTLFNATSCATYTTASLECILDSSFKNNAYENLPTYLTKAGI ECCCCCCHHHHHHHCCCCEEEEECCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHHCCC KVFWYSANDGEKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLL EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHCCHHHHHHCCCCCEEE ILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESLINAYDNTIFYNDYLLDKIIS EEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHCCEEEEHHHHHHHHHH MLENAKQPALMIYLSDHGESLGEEAFYLHGIPKSIAPKEQYEIPFIVYANEPFKEKHSII HHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHE QTQTPINQNVIFHSVLGVFLDFKNPSVVYRPSLDLLKHKKE ECCCCCCCHHHHHHHHHHHEECCCCCEEECCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8391535; 11677609 [H]