Click here to switch to the map view.

The map label for this gene is rnhB_2

Identifier: 15618976

GI number: 15618976

Start: 1222362

End: 1223258

Strand: Reverse

Name: rnhB_2

Synonym: CPn1068

Alternate gene names: 15618976

Gene position: 1223258-1222362 (Counterclockwise)

Preceding gene: 15618978

Following gene: 15618973

Centisome position: 99.43

GC content: 39.58

Gene sequence:

>897_bases
ATGCCGCCACCATTTGTTGTTACTTTAACAACTTCTGCTCAAAACAATTTAAGAGATCAGCTAAAAGAAAAAAATTTTAT
CTTTTCTCAGCCACAGAATACCGTATTTCAAGCTCGCTCTAACACTGTTACCTGCACTCTATACCCCTCCGGGAAACTCG
TAATCCAAGGTAAAGGAAGTGAGGAATTCATAGAATTTTTCTTAGAACCAGAAATCCTTCATACCTTCACCCATGCAAGG
GTAGAGCAAGACCTTCGTCCAAGGTTGGGAGTCGATGAATCAGGGAAAGGTGATTTTTTTGGCCCTTTATGTATTGCGGC
AGTCTATGCATCGAATGCAGAGATCTTAAAAAAACTCTATGAGAATAAAGTCCAAGACTCTAAAAATCTCAAAGACACGA
AAATCGCTTCTTTAGCACGTATCATACGCTCACTATGTGTCTGCGATGTCATCATTCTATACCCAGAAAAATATAACGAG
CTATATGGGAAATTCCAGAATTTAAATACACTTCTTGCTTGGGCCCACGCTACTGTTATCAACAACTTAGCACCCAAACC
TGCAGGAGATGTCTTTGCTATTTCAGATCAGTTTGCAGCTTCAGAATACACCCTACTCAAAGCACTTCAAAAAAAAGAAA
CCGATATTACTTTAATACAAAAGCCACGTGCAGAACAAGATGTAGTCGTAGCAGCAGCTTCTATATTGGCTAGAGATGCA
TTTGTACAGTCGATACAGAAGTTGGAAGAACAATATCAAGTACAGCTTCCTAAAGGTGCTGGATTCAATGTCAAAGCAGC
AGGAAGAGAGATCGCTAAGCAACGAGGGAAAGAGCTCTTAGCAAAAATCAGCAAGACACATTTTAAAACCTTTGACGAAA
TTTGTTCGGGGAAATAA

Upstream 100 bases:

>100_bases
GGCAAAAATAAAAAGTATGAGCACTTTGCATCCTGGATTCCTAGGACTAGGAATTCAATCGTTCTAAATTTTTTCTATAA
TTTATAGGTAGATGTCCTGC

Downstream 100 bases:

>100_bases
GCAAAGCTGACAACAAATGTGACGCAAGAGACAAGAAAATATCACCTACATCAGACTGAAGAGCAATTAAGAAACTAGTT
CTTCTTTACTCAAGTGTGTA

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MPPPFVVTLTTSAQNNLRDQLKEKNFIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGKGSEEFIEFFLEPEILHTFTHAR
VEQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYENKVQDSKNLKDTKIASLARIIRSLCVCDVIILYPEKYNE
LYGKFQNLNTLLAWAHATVINNLAPKPAGDVFAISDQFAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILARDA
FVQSIQKLEEQYQVQLPKGAGFNVKAAGREIAKQRGKELLAKISKTHFKTFDEICSGK

Sequences:

>Translated_298_residues
MPPPFVVTLTTSAQNNLRDQLKEKNFIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGKGSEEFIEFFLEPEILHTFTHAR
VEQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYENKVQDSKNLKDTKIASLARIIRSLCVCDVIILYPEKYNE
LYGKFQNLNTLLAWAHATVINNLAPKPAGDVFAISDQFAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILARDA
FVQSIQKLEEQYQVQLPKGAGFNVKAAGREIAKQRGKELLAKISKTHFKTFDEICSGK
>Mature_297_residues
PPPFVVTLTTSAQNNLRDQLKEKNFIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGKGSEEFIEFFLEPEILHTFTHARV
EQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYENKVQDSKNLKDTKIASLARIIRSLCVCDVIILYPEKYNEL
YGKFQNLNTLLAWAHATVINNLAPKPAGDVFAISDQFAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILARDAF
VQSIQKLEEQYQVQLPKGAGFNVKAAGREIAKQRGKELLAKISKTHFKTFDEICSGK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH3_CHLPN (Q9Z6J1)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   A86624
- PIR:   C81538
- PIR:   F72000
- RefSeq:   NP_225262.1
- RefSeq:   NP_301123.1
- RefSeq:   NP_445321.2
- RefSeq:   NP_877383.1
- ProteinModelPortal:   Q9Z6J1
- SMR:   Q9Z6J1
- GeneID:   1467791
- GeneID:   894683
- GeneID:   919823
- GeneID:   963135
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0782
- KEGG:   cpn:CPn1068
- KEGG:   cpt:CpB1112
- TIGR:   CP_0782
- HOGENOM:   HBG549406
- OMA:   ASIIARY
- ProtClustDB:   PRK00996
- BioCyc:   CPNE115711:CP_0782-MONOMER
- BioCyc:   CPNE115713:CPN1068-MONOMER
- BioCyc:   CPNE138677:CPJ1068-MONOMER
- BioCyc:   CPNE182082:CPB1112-MONOMER
- BRENDA:   3.1.26.4
- GO:   GO:0005737
- HAMAP:   MF_00053
- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337
- PIRSF:   PIRSF037748
- TIGRFAMs:   TIGR00716

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 33273; Mature: 33141

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPPFVVTLTTSAQNNLRDQLKEKNFIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGKGS
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHEEECCCEEEEEEECCCEEEEEECCH
EEFIEFFLEPEILHTFTHARVEQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLY
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
ENKVQDSKNLKDTKIASLARIIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHH
NNLAPKPAGDVFAISDQFAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILARDA
HHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
FVQSIQKLEEQYQVQLPKGAGFNVKAAGREIAKQRGKELLAKISKTHFKTFDEICSGK
HHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PPPFVVTLTTSAQNNLRDQLKEKNFIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGKGS
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHEEECCCEEEEEEECCCEEEEEECCH
EEFIEFFLEPEILHTFTHARVEQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLY
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
ENKVQDSKNLKDTKIASLARIIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVI
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHH
NNLAPKPAGDVFAISDQFAASEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILARDA
HHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
FVQSIQKLEEQYQVQLPKGAGFNVKAAGREIAKQRGKELLAKISKTHFKTFDEICSGK
HHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362