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The map label for this gene is yabC_1

Identifier: 15618297

GI number: 15618297

Start: 430033

End: 430749

Strand: Reverse

Name: yabC_1

Synonym: CPn0382

Alternate gene names: 15618297

Gene position: 430749-430033 (Counterclockwise)

Preceding gene: 15618298

Following gene: 15618296

Centisome position: 35.01

GC content: 45.05

Gene sequence:

>717_bases
GTGACTTTATATCTTCTTCCCAATACTCTCGGTACCCGTGCTGTAGAGACTCTCCCCTCCGTTATAGGAGAATTAGTTCA
TAGACTAGATGGGCTGATTGTAGAAAGTGATCGTGGGGGTAGGGCATTTCTAAGTTTATGGAAAATTCCCGAAGTTCATA
AATTTCCTCTTGCTATTCTTAGTAAACATGCGCGCCTCCCTAAGGCTTGGGATTTTTATCTAGAGCCTATCGTAAAACAC
GGGGAGAATTGGGGACTGATCTCTGATGCGGGTCTTCCCTGTATTGCAGATCCTGGAGCGAGTTTAGTGCGTCGTGCACG
TGCTTTGGGGATTCCTGTGCAGGCTTTTTCAGGTCCCTGTTCGATAACGTTAGCGCTCATGCTTTCAGGCTTGCCTTCCC
AGAGCTTTACGTTTTTGGGATACCTCCCGCAAAGTCCTAAGGAACGTGTAAAGTCGATAAAAAAGGCAGCGACCTCCAAA
GAGGTATCTACTTCAGTATGTATAGAAACTTCTTATCGTAACGTCTATACTTTTGAGTCTCTTCTAGATACTTTACCTTC
CTATGCGGAGCTTTGTGTTGCCTCTGACCTTTCGGGCCCGAGTGAACTTGTTCTCACACGCCAAGTGCAATCATGGAGAA
CTACTGAGGACTTAGGTTCTGTGAAGCAAAGTATAACCAAAGTCCCAACAATATTTCTTTTCCACATCCCGAATTAA

Upstream 100 bases:

>100_bases
AAGCCTTAAATTCTTTATTTTATGCAGAAACCTTAATTAAAAATAATGTCCAAGATCCTATAGTAGCTGTGGAAACTTTA
GTGATTAGAATGGTTAACCT

Downstream 100 bases:

>100_bases
TTTTTTCTTAGCTTGTTTTATCCCCGGTATCATTGTCAGGAGTTTCTTAGCATGTAAGCTCTTCGGGGATATTTTTCTTG
TGATCATAAGCAAAAATTAA

Product: SAM-dependent methytransferase

Products: NA

Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTLYLLPNTLGTRAVETLPSVIGELVHRLDGLIVESDRGGRAFLSLWKIPEVHKFPLAILSKHARLPKAWDFYLEPIVKH
GENWGLISDAGLPCIADPGASLVRRARALGIPVQAFSGPCSITLALMLSGLPSQSFTFLGYLPQSPKERVKSIKKAATSK
EVSTSVCIETSYRNVYTFESLLDTLPSYAELCVASDLSGPSELVLTRQVQSWRTTEDLGSVKQSITKVPTIFLFHIPN

Sequences:

>Translated_238_residues
MTLYLLPNTLGTRAVETLPSVIGELVHRLDGLIVESDRGGRAFLSLWKIPEVHKFPLAILSKHARLPKAWDFYLEPIVKH
GENWGLISDAGLPCIADPGASLVRRARALGIPVQAFSGPCSITLALMLSGLPSQSFTFLGYLPQSPKERVKSIKKAATSK
EVSTSVCIETSYRNVYTFESLLDTLPSYAELCVASDLSGPSELVLTRQVQSWRTTEDLGSVKQSITKVPTIFLFHIPN
>Mature_237_residues
TLYLLPNTLGTRAVETLPSVIGELVHRLDGLIVESDRGGRAFLSLWKIPEVHKFPLAILSKHARLPKAWDFYLEPIVKHG
ENWGLISDAGLPCIADPGASLVRRARALGIPVQAFSGPCSITLALMLSGLPSQSFTFLGYLPQSPKERVKSIKKAATSKE
VSTSVCIETSYRNVYTFESLLDTLPSYAELCVASDLSGPSELVLTRQVQSWRTTEDLGSVKQSITKVPTIFLFHIPN

Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA [H]

COG id: COG0313

COG function: function code R; Predicted methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmI family [H]

Homologues:

Organism=Escherichia coli, GI1789535, Length=196, Percent_Identity=31.1224489795918, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000878
- InterPro:   IPR014777
- InterPro:   IPR008189
- InterPro:   IPR018063 [H]

Pfam domain/function: PF00590 TP_methylase [H]

EC number: NA

Molecular weight: Translated: 26107; Mature: 25975

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYLLPNTLGTRAVETLPSVIGELVHRLDGLIVESDRGGRAFLSLWKIPEVHKFPLAIL
CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCCHHHHHHHH
SKHARLPKAWDFYLEPIVKHGENWGLISDAGLPCIADPGASLVRRARALGIPVQAFSGPC
HHHCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCH
SITLALMLSGLPSQSFTFLGYLPQSPKERVKSIKKAATSKEVSTSVCIETSYRNVYTFES
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHH
LLDTLPSYAELCVASDLSGPSELVLTRQVQSWRTTEDLGSVKQSITKVPTIFLFHIPN
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCC
>Mature Secondary Structure 
TLYLLPNTLGTRAVETLPSVIGELVHRLDGLIVESDRGGRAFLSLWKIPEVHKFPLAIL
EEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHCCCCCHHHHHHHH
SKHARLPKAWDFYLEPIVKHGENWGLISDAGLPCIADPGASLVRRARALGIPVQAFSGPC
HHHCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCH
SITLALMLSGLPSQSFTFLGYLPQSPKERVKSIKKAATSKEVSTSVCIETSYRNVYTFES
HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHH
LLDTLPSYAELCVASDLSGPSELVLTRQVQSWRTTEDLGSVKQSITKVPTIFLFHIPN
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]