Click here to switch to the map view.

The map label for this gene is ygcF [C]

Identifier: 15607013

GI number: 15607013

Start: 1431465

End: 1432124

Strand: Direct

Name: ygcF [C]

Synonym: aq_2035

Alternate gene names: 15607013

Gene position: 1431465-1432124 (Clockwise)

Preceding gene: 15607012

Following gene: 15607014

Centisome position: 92.27

GC content: 42.12

Gene sequence:

>660_bases
ATGCTACGAAATAAGGTACGAAAAACCGACACTCTGATAGCCCTCAACGAAGTATACGAAAGCATTCAGGGGGAAGGTCT
ACTTGTGGGCCTTCCCTCCGTCTTTATAAGACTTCAGGGGTGTAATTTACGCTGTCCTTGGTGCGACCAGCCAGAAGCTT
TGAGCTTTTCAGGTAGGAAAGTAAAACTGAGTTCTTTGATAAATGAATTAAAGAAGTTCACAGCCAAACACATAGTTATA
ACTGGTGGTGAGCCTTTCGCTCATAGAGAACTCCCTTTCATAGTGGAATTCCTCCTTTCGGAAGGTTACTCAGTTCAAAT
AGAGACCAACGGAACACTCTGGGTGGAGGAGATGGAAAAGTTTGCAGAGGGTATTCACATAACCTGCTCTCCTAAAGGGG
TTGCAAAGTACTACGTGCATCCCAAGATCTTAAAGTACGCAAAGGAATTGAAGTTCGTTGTTGACAAAGAGTTTTCCAAA
GAAGTCCTTAAAAAAGAAGAGTTTGAAAGATTTTTAAGGGAAGGAAAAGTGGTTCTTCAGCCCGAGAGCAACAGAAAGGA
GATGATGGAGAAGGCTCTAAAAATTCAAAAAGAGCTTTTAAAGGAATGCTACACAGTGAGGGTAATCCCTCAGGTTCACA
AGTGTTTTGACCTGAAATGA

Upstream 100 bases:

>100_bases
TAAAGAGGTTCAAGGAAGACGTGCAGGAAGTCACAGCAGGTTACGAGTGCGGTGTTAAATTAAAGGACTACAACGACGTA
AAAGTGGGTGACCAGATAGA

Downstream 100 bases:

>100_bases
GAAAACTGATTTCTTTAATCCTAGTAATTATCTTTCCTTACATTTCCTTAGGGCTTTCTGCAAGAATAGCCTTCAGCGAA
AAGTTTATAGAGTGGGAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MLRNKVRKTDTLIALNEVYESIQGEGLLVGLPSVFIRLQGCNLRCPWCDQPEALSFSGRKVKLSSLINELKKFTAKHIVI
TGGEPFAHRELPFIVEFLLSEGYSVQIETNGTLWVEEMEKFAEGIHITCSPKGVAKYYVHPKILKYAKELKFVVDKEFSK
EVLKKEEFERFLREGKVVLQPESNRKEMMEKALKIQKELLKECYTVRVIPQVHKCFDLK

Sequences:

>Translated_219_residues
MLRNKVRKTDTLIALNEVYESIQGEGLLVGLPSVFIRLQGCNLRCPWCDQPEALSFSGRKVKLSSLINELKKFTAKHIVI
TGGEPFAHRELPFIVEFLLSEGYSVQIETNGTLWVEEMEKFAEGIHITCSPKGVAKYYVHPKILKYAKELKFVVDKEFSK
EVLKKEEFERFLREGKVVLQPESNRKEMMEKALKIQKELLKECYTVRVIPQVHKCFDLK
>Mature_219_residues
MLRNKVRKTDTLIALNEVYESIQGEGLLVGLPSVFIRLQGCNLRCPWCDQPEALSFSGRKVKLSSLINELKKFTAKHIVI
TGGEPFAHRELPFIVEFLLSEGYSVQIETNGTLWVEEMEKFAEGIHITCSPKGVAKYYVHPKILKYAKELKFVVDKEFSK
EVLKKEEFERFLREGKVVLQPESNRKEMMEKALKIQKELLKECYTVRVIPQVHKCFDLK

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=199, Percent_Identity=33.6683417085427, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25336; Mature: 25336

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRNKVRKTDTLIALNEVYESIQGEGLLVGLPSVFIRLQGCNLRCPWCDQPEALSFSGRK
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECHHHEEEECCCCEECCCCCCCCCCCCCCCE
VKLSSLINELKKFTAKHIVITGGEPFAHRELPFIVEFLLSEGYSVQIETNGTLWVEEMEK
EEHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEHHHHHH
FAEGIHITCSPKGVAKYYVHPKILKYAKELKFVVDKEFSKEVLKKEEFERFLREGKVVLQ
HHCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
PESNRKEMMEKALKIQKELLKECYTVRVIPQVHKCFDLK
CCCCHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHCCC
>Mature Secondary Structure
MLRNKVRKTDTLIALNEVYESIQGEGLLVGLPSVFIRLQGCNLRCPWCDQPEALSFSGRK
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECHHHEEEECCCCEECCCCCCCCCCCCCCCE
VKLSSLINELKKFTAKHIVITGGEPFAHRELPFIVEFLLSEGYSVQIETNGTLWVEEMEK
EEHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEHHHHHH
FAEGIHITCSPKGVAKYYVHPKILKYAKELKFVVDKEFSKEVLKKEEFERFLREGKVVLQ
HHCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
PESNRKEMMEKALKIQKELLKECYTVRVIPQVHKCFDLK
CCCCHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]