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The map label for this gene is rpoC [H]

Identifier: 15606950

GI number: 15606950

Start: 1366175

End: 1370899

Strand: Direct

Name: rpoC [H]

Synonym: aq_1945

Alternate gene names: 15606950

Gene position: 1366175-1370899 (Clockwise)

Preceding gene: 15606949

Following gene: 15606952

Centisome position: 88.06

GC content: 47.05

Gene sequence:

>4725_bases
ATGAGTGAAGCAAGAAGGGGTATCTTCCCCTTCTCAAAAATTAAATTGATGCTCGCTTCTCCCGAGGATATCAGAAGCTG
GTCTCACGGTGAAGTTAAGAGACCTGAAACTCTAAACTACAGAACTCTGAAACCCGAAAAGGACGGTCTCTTCTGCGCTA
AGATTTTTGGTCCCATAAAAGATTACGAGTGTCTCTGCGGAAAGTACAGGGGAAAGAGGTACGAAGGAAAGATATGTGAA
AAGTGCGGTGTTGAAGTTACAACTTCTTACGTAAGGAGACAGAGGTTCGGTCACATAGAACTCGCTGCTCCCGTCGTTCA
CATATGGTTCTTAAAGAGCACACCCTCCAAGATAGGAACGCTCCTTAACCTCACTTCAAGAGACGTTGAAAGGGTCGCTT
ACTTTGAGTCTTACCTCGTTATTGAGTATCCAAACGAGGAAGAAGAGGAAAAGTTTGAGAAGGACGAGCACACGATACCA
CTCAACGACGGCATTTCCACCAAGTGGGTAAAACTCCACGTGGTGAACGAGGAGGAGTTTGAGGAGAAGTACGCCTTCAC
CATAGACGAAAAGTACGAGCACGGAATGGGGGCGGAAATACTCAAAGAAGTTCTATCAAAACTCGACCTAGACGCCTACT
CCAGAAAACTGAAGGAAATAGTAAAGCCCTACTCAATAGGATTTGAAGACCTCGGAAAAGAAATTGAACAGAAGTACAAG
AACCTTTACCAGAAACTTATCAAGGTTATCGCGGACGACTTCAGGGCTTACGGCGTTGAGATAAAAGGACTTGAAGATCA
CGGACTCAGCCTAGAACAGGCTATCCACAGGATTCTAAACGAAGAACTGTACCTCAATGTAGAGACGGGAGAAATTTCCC
TTGAAGACTGCGGAGACAGCTGTCTCACGGGAAGGGACGCTCTGAAGGAGTACTACGAAAGGGTAAGGGAACACAAAAAG
GACATCCCCATCTTTGAAAAGATAAAGGAAGACATAAGATCCACGGTACTGAGGGAAATATCCGAAGCCAGAATCAGGAA
GGCGCTCAGAACTCTCCAGCTAGTAGAGGGCTTCAAGAAGAGCGGAAACAGACCAGAGTGGATGATACTTGAAGTTCTTC
CAGTTCTTCCTCCGGAACTACGTCCCCTCGTTGCACTGGACGGAGGAAGGTTTGCAACTTCTGATCTGAACGACTTCTAC
AGAAGGGTTATAAACAGGAATAACAGACTAAAGAGATTAATAGAACTGAACGCCCCCGACATAATCATCAGAAACGAAAA
GAGAATGCTTCAGGAGGCGGTTGATGCCTTAATAGACAACGGAAAGAGAGGAAACCCTGTAAAGCAAAATGGAAGACCTT
TAAAGTCTCTTGCGGACTACCTGAAAGGTAAACAGGGAAGGTTTAGGCAAAACCTCCTCGGAAAGAGAGTTGACTATTCA
GGACGTTCCGTTATAGTCGTCGGTCCAGAACTCCAGATGCACCAGTGCGGTCTTCCCAAGATAATGGCCCTCGAACTCTT
CAAACCCTTCGTATACAGGAGACTGGAAGAAAAAGGGTATGCGACTTCCATAAAACACGCAAAGAGACTCGTAGAGCAAA
AGACACCCGAAGTATGGGAGTGCCTTGAAGAAGTGGTCAAAGAACACCCCGTTCTGCTAAACCGTGCTCCAACGCTCCAC
AGACCTTCAATTCAGGCTTTTGAACCCGTTCTCGTAGAAGGAAAAGCCATACAGCTACACCCCCTCGTTTGCCCGCCCTT
TAACGCGGACTTTGACGGAGACCAAATGGCCGTACACGTCCCCCTCGGAATAGAGGCTCAGCTTGAGTCTTACATACTTA
TGCTCTCCACGCAAAACGTACTTTCCCCCGCACACGGAAAACCCCTCACGATGCCCTCACAGGACATGGTTCTTGGGACT
TACTACATCACCCACGACCCCATACCCGGAAGGAAAGGAGAAGGAAAAGCTTTCGGTACCTTTGAAGAAGTCCTCAAAGC
TCTTGAACTCGGACACGTTGACATACACGCGAAGATAAAGGTAAAAGTTGGAAACGAGTGGATAGAAACAACTCCCGGAA
GGGTACTCTTCAACTCCATAATGCCCGAAGGACAGCCCTTCGTTAACAAAACCCTTGACAAGAAAGGACTTTCAAAGCTA
ATCACTGAACTCTATATAAGGGTAGGAAACGAGGAGACTGTTAAGTTCCTTGACCGTGTGAAAGAACTTGGATTCCTCAG
GTCAACGCTTGCGGGTATTTCCATTGGTGTGGAAGACCTGCAGGTTCCCAAGGCAAAGAAGAAGATAATAGAGGAAGCCC
TCAAGAAGACGGAAGAGATATGGAACCAGTACGTTCAGGGTATCATCACCAACAAGGAGAGGTACAACAGGATAATAGAC
GTCTGGTCCGAAGCCACGAACCTCGTTTCCAAGGCGATGTTTGAAGAGATAGAAAAGTCTAAGAGAATAGAAAACGGAAA
GGAATACCCGGGAACCTTTAACCCCATATACATGATGGCAATCTCTGGAGCGAGAGGTAACAGGGACCAGATAAGACAGC
TTGCAGGAATGAGAGGTCTTATGGCTAAGCACTCTGGTGAGTTTATAGAAACGCCGATTATCTCAAACTTCAGGGAAGGT
CTTTCCGTTCTCGAGTACTTTATATCCACTTACGGTGCGAGAAAGGGTCTCGCGGACACCGCCCTGAAAACCGCATTTGC
CGGATATCTGACGAGAAGACTCGTTGACGTAGCTCAGGACATAACCATTACTGAACGTGACTGCGGAACCGTTAAAGGCT
TTGAAATGGAACCCATAGTAGAAGCGGGTGAAGAGAGGGTTCCCCTCAAGGACAGAATATTCGGAAGGGTTCTCGCGGAA
GACGTAAAAGATCCCTACACCGGTGAGATAATCGCAAGGAGAAACGAGGTAATAGACGAAAAACTCGCGGAAAAGATAAC
GAAGGCGGGAATAGAAAAGGTAAGGGTACGCTCACCTCTCACCTGTGAGGCAAAACACGGCGTTTGTGCTATGTGCTACG
GATGGGATCTCTCCCAGAGGAAGATAGTATCCGTGGGTGAGGCGGTTGGAATTATAGCAGCACAATCCATAGGTGAGCCC
GGAACACAGCTCACCATGAGAACCTTCCACATAGGTGGTGCAGCAACAGCTCAGAAGGTTCAGAGCTTCGTAAAGGCTGA
AAGTGACGGTAAAGTCAAGTTCTACAACGTAAAACTCATAGTAAACAGAAAGGGTGAAAAGATAAACATCTCCAAGGACG
CAGCTATCGGAATAGTGGACGAAGAAGGCAGGCTCCTTGAAAGACACACTATACCTTACGGTGCGAGAATTCTCGTAGAA
GAAGGCCAGGAAGTTAAAGCAGAAACTAAACTCGCAGATTGGGATCCCTTCAACACTTACATAATCGCTGAAGTAGGCGG
AAAGGTAGAACTCAGGGACATAATCCTCGACGTTACCGTAAGGGAAGAAAGGGATCCGATAACAGGAAAGACGGCGAGCG
TAATATCCTTCATGAGACCAAGAGACGCTATGCTACACACTCCCAGAATAGCTGTCATCACAGAAGACGGGAAAGAGTAC
ATCTACGACCTTCCTGTTAACGCCATTCTCAACATACCGCCCGAAAAGATATCCCTCGAGTGGAGAGTATGCCCCACCTG
CTCCGAGTCCGAAGAGACCACTATACAGCACCAGTACTACGTGGTTAAAGACCTTGAAGTTCAACCCGGTGACATACTCG
CGAGAATTCCAAAAGAAACTGCTAAGGTTAGGGACATCGTCGGTGGTCTTCCGAGGGTTGAAGAGCTCTTTGAGGCGAGA
AAGCCCAAGAATCCCGCAATACTCAGCGAAATAGACGGTTACGTTAAGATTTACGAGGACGCGGACGAGGTGATCATATT
CAACCCCAGAACCGGTGAAACCGCTAAGTACTCCATAAAGAAGGACGAGCTAATCCTCGTAAGACACGGTCAATTCGTCA
AGAAAGGTCAAAAGATTACGGAAACAAAGGTTGCGGAAATAGACGGTCAGGTAAGGATTAAGGGAAGAGGCTTTAAGGTA
ATCGTTTACAACCCTGAAACAGGACTACAGAGGGAGTACTTCGTTCCCAAAGGTAAATTCCTGCTCGTTAAGGAAGGTGA
CTTCGTAAAGGCAGGGGACCAGCTCACAGACGGAACACCCGTACCCGAAGAAATACTCAGGATAAAGGGAATAGAAGAGC
TGGAAAAATTCCTCCTTAAAGAAGTCCAGATGGTTTACAAATTGCAAGGTGTTGACATAAACGACAAACACTTTGAAATC
ATAATCAAGCAGATGCTCAAGAAGGTGAGGATTATAGACCCCGGAGACAGCAGATTCCTCGTAGGCGAAGAAGTGGACAA
AGAAGAACTCGAAGAAGAAATTCAAAGGATCAAGCTCGAAGGCGGAAAACTGCCCAAGGCTGAACCCGTACTCGTCGGTA
TTACGAGAGCAGCACTTTCCACGAGAAGCTGGATTTCCGCTGCATCCTTCCAGGAAACTACGAGAGTACTCACAGACGCT
TCCGTTGAAGGTAAGATAGACGAACTCCGAGGTCTTAAAGAGAACGTAATAATCGGAAACATAATACCCGCCGGAACGGG
TGTGGACGAGTACAGAGAAGTGGACGTAATCCCTGCGGAAGAAAAGGTTCTCGAAGAGAAGAAAGAACCCAAAGAGGGCT
CTTAA

Upstream 100 bases:

>100_bases
TTCTCGTAAGAGAGCTAAAGGCTCTTGGGCTAAACGTTAAGTGTCTGAATGGTGAAGAGAAGCCTTGTGACGAGGTTGAA
GTTAAAGAGGAGGAAGAAAA

Downstream 100 bases:

>100_bases
GCCCTCTTCCCTTTAAAAACCTTCTTTAACAGGAGTAAAAGGAACAAGATAAAATAAGAATTTGTCTCTGTGTTACATCC
ACCGCCTCCACCATTTGAAG

Product: RNA polymerase beta prime subunit

Products: NA

Alternate protein names: RNAP subunit beta'; RNA polymerase subunit beta'; Transcriptase subunit beta' [H]

Number of amino acids: Translated: 1574; Mature: 1573

Protein sequence:

>1574_residues
MSEARRGIFPFSKIKLMLASPEDIRSWSHGEVKRPETLNYRTLKPEKDGLFCAKIFGPIKDYECLCGKYRGKRYEGKICE
KCGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGTLLNLTSRDVERVAYFESYLVIEYPNEEEEEKFEKDEHTIP
LNDGISTKWVKLHVVNEEEFEEKYAFTIDEKYEHGMGAEILKEVLSKLDLDAYSRKLKEIVKPYSIGFEDLGKEIEQKYK
NLYQKLIKVIADDFRAYGVEIKGLEDHGLSLEQAIHRILNEELYLNVETGEISLEDCGDSCLTGRDALKEYYERVREHKK
DIPIFEKIKEDIRSTVLREISEARIRKALRTLQLVEGFKKSGNRPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDFY
RRVINRNNRLKRLIELNAPDIIIRNEKRMLQEAVDALIDNGKRGNPVKQNGRPLKSLADYLKGKQGRFRQNLLGKRVDYS
GRSVIVVGPELQMHQCGLPKIMALELFKPFVYRRLEEKGYATSIKHAKRLVEQKTPEVWECLEEVVKEHPVLLNRAPTLH
RPSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHVPLGIEAQLESYILMLSTQNVLSPAHGKPLTMPSQDMVLGT
YYITHDPIPGRKGEGKAFGTFEEVLKALELGHVDIHAKIKVKVGNEWIETTPGRVLFNSIMPEGQPFVNKTLDKKGLSKL
ITELYIRVGNEETVKFLDRVKELGFLRSTLAGISIGVEDLQVPKAKKKIIEEALKKTEEIWNQYVQGIITNKERYNRIID
VWSEATNLVSKAMFEEIEKSKRIENGKEYPGTFNPIYMMAISGARGNRDQIRQLAGMRGLMAKHSGEFIETPIISNFREG
LSVLEYFISTYGARKGLADTALKTAFAGYLTRRLVDVAQDITITERDCGTVKGFEMEPIVEAGEERVPLKDRIFGRVLAE
DVKDPYTGEIIARRNEVIDEKLAEKITKAGIEKVRVRSPLTCEAKHGVCAMCYGWDLSQRKIVSVGEAVGIIAAQSIGEP
GTQLTMRTFHIGGAATAQKVQSFVKAESDGKVKFYNVKLIVNRKGEKINISKDAAIGIVDEEGRLLERHTIPYGARILVE
EGQEVKAETKLADWDPFNTYIIAEVGGKVELRDIILDVTVREERDPITGKTASVISFMRPRDAMLHTPRIAVITEDGKEY
IYDLPVNAILNIPPEKISLEWRVCPTCSESEETTIQHQYYVVKDLEVQPGDILARIPKETAKVRDIVGGLPRVEELFEAR
KPKNPAILSEIDGYVKIYEDADEVIIFNPRTGETAKYSIKKDELILVRHGQFVKKGQKITETKVAEIDGQVRIKGRGFKV
IVYNPETGLQREYFVPKGKFLLVKEGDFVKAGDQLTDGTPVPEEILRIKGIEELEKFLLKEVQMVYKLQGVDINDKHFEI
IIKQMLKKVRIIDPGDSRFLVGEEVDKEELEEEIQRIKLEGGKLPKAEPVLVGITRAALSTRSWISAASFQETTRVLTDA
SVEGKIDELRGLKENVIIGNIIPAGTGVDEYREVDVIPAEEKVLEEKKEPKEGS

Sequences:

>Translated_1574_residues
MSEARRGIFPFSKIKLMLASPEDIRSWSHGEVKRPETLNYRTLKPEKDGLFCAKIFGPIKDYECLCGKYRGKRYEGKICE
KCGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGTLLNLTSRDVERVAYFESYLVIEYPNEEEEEKFEKDEHTIP
LNDGISTKWVKLHVVNEEEFEEKYAFTIDEKYEHGMGAEILKEVLSKLDLDAYSRKLKEIVKPYSIGFEDLGKEIEQKYK
NLYQKLIKVIADDFRAYGVEIKGLEDHGLSLEQAIHRILNEELYLNVETGEISLEDCGDSCLTGRDALKEYYERVREHKK
DIPIFEKIKEDIRSTVLREISEARIRKALRTLQLVEGFKKSGNRPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDFY
RRVINRNNRLKRLIELNAPDIIIRNEKRMLQEAVDALIDNGKRGNPVKQNGRPLKSLADYLKGKQGRFRQNLLGKRVDYS
GRSVIVVGPELQMHQCGLPKIMALELFKPFVYRRLEEKGYATSIKHAKRLVEQKTPEVWECLEEVVKEHPVLLNRAPTLH
RPSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHVPLGIEAQLESYILMLSTQNVLSPAHGKPLTMPSQDMVLGT
YYITHDPIPGRKGEGKAFGTFEEVLKALELGHVDIHAKIKVKVGNEWIETTPGRVLFNSIMPEGQPFVNKTLDKKGLSKL
ITELYIRVGNEETVKFLDRVKELGFLRSTLAGISIGVEDLQVPKAKKKIIEEALKKTEEIWNQYVQGIITNKERYNRIID
VWSEATNLVSKAMFEEIEKSKRIENGKEYPGTFNPIYMMAISGARGNRDQIRQLAGMRGLMAKHSGEFIETPIISNFREG
LSVLEYFISTYGARKGLADTALKTAFAGYLTRRLVDVAQDITITERDCGTVKGFEMEPIVEAGEERVPLKDRIFGRVLAE
DVKDPYTGEIIARRNEVIDEKLAEKITKAGIEKVRVRSPLTCEAKHGVCAMCYGWDLSQRKIVSVGEAVGIIAAQSIGEP
GTQLTMRTFHIGGAATAQKVQSFVKAESDGKVKFYNVKLIVNRKGEKINISKDAAIGIVDEEGRLLERHTIPYGARILVE
EGQEVKAETKLADWDPFNTYIIAEVGGKVELRDIILDVTVREERDPITGKTASVISFMRPRDAMLHTPRIAVITEDGKEY
IYDLPVNAILNIPPEKISLEWRVCPTCSESEETTIQHQYYVVKDLEVQPGDILARIPKETAKVRDIVGGLPRVEELFEAR
KPKNPAILSEIDGYVKIYEDADEVIIFNPRTGETAKYSIKKDELILVRHGQFVKKGQKITETKVAEIDGQVRIKGRGFKV
IVYNPETGLQREYFVPKGKFLLVKEGDFVKAGDQLTDGTPVPEEILRIKGIEELEKFLLKEVQMVYKLQGVDINDKHFEI
IIKQMLKKVRIIDPGDSRFLVGEEVDKEELEEEIQRIKLEGGKLPKAEPVLVGITRAALSTRSWISAASFQETTRVLTDA
SVEGKIDELRGLKENVIIGNIIPAGTGVDEYREVDVIPAEEKVLEEKKEPKEGS
>Mature_1573_residues
SEARRGIFPFSKIKLMLASPEDIRSWSHGEVKRPETLNYRTLKPEKDGLFCAKIFGPIKDYECLCGKYRGKRYEGKICEK
CGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGTLLNLTSRDVERVAYFESYLVIEYPNEEEEEKFEKDEHTIPL
NDGISTKWVKLHVVNEEEFEEKYAFTIDEKYEHGMGAEILKEVLSKLDLDAYSRKLKEIVKPYSIGFEDLGKEIEQKYKN
LYQKLIKVIADDFRAYGVEIKGLEDHGLSLEQAIHRILNEELYLNVETGEISLEDCGDSCLTGRDALKEYYERVREHKKD
IPIFEKIKEDIRSTVLREISEARIRKALRTLQLVEGFKKSGNRPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDFYR
RVINRNNRLKRLIELNAPDIIIRNEKRMLQEAVDALIDNGKRGNPVKQNGRPLKSLADYLKGKQGRFRQNLLGKRVDYSG
RSVIVVGPELQMHQCGLPKIMALELFKPFVYRRLEEKGYATSIKHAKRLVEQKTPEVWECLEEVVKEHPVLLNRAPTLHR
PSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHVPLGIEAQLESYILMLSTQNVLSPAHGKPLTMPSQDMVLGTY
YITHDPIPGRKGEGKAFGTFEEVLKALELGHVDIHAKIKVKVGNEWIETTPGRVLFNSIMPEGQPFVNKTLDKKGLSKLI
TELYIRVGNEETVKFLDRVKELGFLRSTLAGISIGVEDLQVPKAKKKIIEEALKKTEEIWNQYVQGIITNKERYNRIIDV
WSEATNLVSKAMFEEIEKSKRIENGKEYPGTFNPIYMMAISGARGNRDQIRQLAGMRGLMAKHSGEFIETPIISNFREGL
SVLEYFISTYGARKGLADTALKTAFAGYLTRRLVDVAQDITITERDCGTVKGFEMEPIVEAGEERVPLKDRIFGRVLAED
VKDPYTGEIIARRNEVIDEKLAEKITKAGIEKVRVRSPLTCEAKHGVCAMCYGWDLSQRKIVSVGEAVGIIAAQSIGEPG
TQLTMRTFHIGGAATAQKVQSFVKAESDGKVKFYNVKLIVNRKGEKINISKDAAIGIVDEEGRLLERHTIPYGARILVEE
GQEVKAETKLADWDPFNTYIIAEVGGKVELRDIILDVTVREERDPITGKTASVISFMRPRDAMLHTPRIAVITEDGKEYI
YDLPVNAILNIPPEKISLEWRVCPTCSESEETTIQHQYYVVKDLEVQPGDILARIPKETAKVRDIVGGLPRVEELFEARK
PKNPAILSEIDGYVKIYEDADEVIIFNPRTGETAKYSIKKDELILVRHGQFVKKGQKITETKVAEIDGQVRIKGRGFKVI
VYNPETGLQREYFVPKGKFLLVKEGDFVKAGDQLTDGTPVPEEILRIKGIEELEKFLLKEVQMVYKLQGVDINDKHFEII
IKQMLKKVRIIDPGDSRFLVGEEVDKEELEEEIQRIKLEGGKLPKAEPVLVGITRAALSTRSWISAASFQETTRVLTDAS
VEGKIDELRGLKENVIIGNIIPAGTGVDEYREVDVIPAEEKVLEEKKEPKEGS

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase beta' chain family [H]

Homologues:

Organism=Homo sapiens, GI4505939, Length=713, Percent_Identity=24.4039270687237, Blast_Score=183, Evalue=1e-45,
Organism=Homo sapiens, GI39725938, Length=1081, Percent_Identity=24.8843663274746, Blast_Score=180, Evalue=1e-44,
Organism=Homo sapiens, GI103471997, Length=755, Percent_Identity=26.6225165562914, Blast_Score=139, Evalue=2e-32,
Organism=Escherichia coli, GI2367335, Length=1297, Percent_Identity=47.8797224363917, Blast_Score=1150, Evalue=0.0,
Organism=Caenorhabditis elegans, GI25145495, Length=865, Percent_Identity=24.8554913294798, Blast_Score=193, Evalue=8e-49,
Organism=Caenorhabditis elegans, GI71987878, Length=663, Percent_Identity=24.73604826546, Blast_Score=177, Evalue=6e-44,
Organism=Saccharomyces cerevisiae, GI6324690, Length=664, Percent_Identity=24.8493975903614, Blast_Score=159, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6320061, Length=382, Percent_Identity=31.151832460733, Blast_Score=152, Evalue=6e-37,
Organism=Drosophila melanogaster, GI17530899, Length=664, Percent_Identity=25.3012048192771, Blast_Score=175, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281360912, Length=754, Percent_Identity=25.5968169761273, Blast_Score=153, Evalue=1e-36,
Organism=Drosophila melanogaster, GI17647875, Length=722, Percent_Identity=23.2686980609418, Blast_Score=120, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000722
- InterPro:   IPR006592
- InterPro:   IPR007080
- InterPro:   IPR007066
- InterPro:   IPR007083
- InterPro:   IPR007081
- InterPro:   IPR012754 [H]

Pfam domain/function: PF04997 RNA_pol_Rpb1_1; PF00623 RNA_pol_Rpb1_2; PF04983 RNA_pol_Rpb1_3; PF05000 RNA_pol_Rpb1_4; PF04998 RNA_pol_Rpb1_5 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 178503; Mature: 178372

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEARRGIFPFSKIKLMLASPEDIRSWSHGEVKRPETLNYRTLKPEKDGLFCAKIFGPIK
CCCCCCCCCCHHHEEEEEECCHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEHHHCCCC
DYECLCGKYRGKRYEGKICEKCGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGT
CHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHCCCEEEECCEEEEEEECCCHHHHHH
LLNLTSRDVERVAYFESYLVIEYPNEEEEEKFEKDEHTIPLNDGISTKWVKLHVVNEEEF
HHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHCCCCEECCCCCCCCEEEEEEEECHHHH
EEKYAFTIDEKYEHGMGAEILKEVLSKLDLDAYSRKLKEIVKPYSIGFEDLGKEIEQKYK
HHHHEEEECHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHH
NLYQKLIKVIADDFRAYGVEIKGLEDHGLSLEQAIHRILNEELYLNVETGEISLEDCGDS
HHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHCCCEEEEEEECCEEEHHHCCCC
CLTGRDALKEYYERVREHKKDIPIFEKIKEDIRSTVLREISEARIRKALRTLQLVEGFKK
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGNRPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDFYRRVINRNNRLKRLIELNAPD
CCCCCCEEEEEEHHCCCCCCCCEEEECCCCEECCHHHHHHHHHHCCCHHHHHHHHCCCCC
IIIRNEKRMLQEAVDALIDNGKRGNPVKQNGRPLKSLADYLKGKQGRFRQNLLGKRVDYS
EEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCC
GRSVIVVGPELQMHQCGLPKIMALELFKPFVYRRLEEKGYATSIKHAKRLVEQKTPEVWE
CCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
CLEEVVKEHPVLLNRAPTLHRPSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHV
HHHHHHHHCCEEECCCCCCCCCCHHHCCCEEECCCEEEEECEECCCCCCCCCCCCEEEEE
PLGIEAQLESYILMLSTQNVLSPAHGKPLTMPSQDMVLGTYYITHDPIPGRKGEGKAFGT
CCCCHHHHCCEEEEEECCHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCH
FEEVLKALELGHVDIHAKIKVKVGNEWIETTPGRVLFNSIMPEGQPFVNKTLDKKGLSKL
HHHHHHHHHCCCEEEEEEEEEEECCCHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
ITELYIRVGNEETVKFLDRVKELGFLRSTLAGISIGVEDLQVPKAKKKIIEEALKKTEEI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHH
WNQYVQGIITNKERYNRIIDVWSEATNLVSKAMFEEIEKSKRIENGKEYPGTFNPIYMMA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
ISGARGNRDQIRQLAGMRGLMAKHSGEFIETPIISNFREGLSVLEYFISTYGARKGLADT
EECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ALKTAFAGYLTRRLVDVAQDITITERDCGTVKGFEMEPIVEAGEERVPLKDRIFGRVLAE
HHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
DVKDPYTGEIIARRNEVIDEKLAEKITKAGIEKVRVRSPLTCEAKHGVCAMCYGWDLSQR
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEECCCCEEEEEECCCCCCC
KIVSVGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAQKVQSFVKAESDGKVKFYNVKLI
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEE
VNRKGEKINISKDAAIGIVDEEGRLLERHTIPYGARILVEEGQEVKAETKLADWDPFNTY
EECCCCEEEECCCCEEEEECCCCCEEHHCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCE
IIAEVGGKVELRDIILDVTVREERDPITGKTASVISFMRPRDAMLHTPRIAVITEDGKEY
EEEECCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHCCCCEEEEEECCCCEE
IYDLPVNAILNIPPEKISLEWRVCPTCSESEETTIQHQYYVVKDLEVQPGDILARIPKET
EEECCCHHEECCCCHHEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHCCHHH
AKVRDIVGGLPRVEELFEARKPKNPAILSEIDGYVKIYEDADEVIIFNPRTGETAKYSIK
HHHHHHHCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCEEEECCCCCCCEEEEEC
KDELILVRHGQFVKKGQKITETKVAEIDGQVRIKGRGFKVIVYNPETGLQREYFVPKGKF
CCCEEEEECCHHHHCCCHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCEEECCCCCE
LLVKEGDFVKAGDQLTDGTPVPEEILRIKGIEELEKFLLKEVQMVYKLQGVDINDKHFEI
EEEECCCEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
IIKQMLKKVRIIDPGDSRFLVGEEVDKEELEEEIQRIKLEGGKLPKAEPVLVGITRAALS
HHHHHHHHCEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHH
TRSWISAASFQETTRVLTDASVEGKIDELRGLKENVIIGNIIPAGTGVDEYREVDVIPAE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHCEEEEECCCCCCCCHHHHCCCCCCCH
EKVLEEKKEPKEGS
HHHHHHHCCCCCCC
>Mature Secondary Structure 
SEARRGIFPFSKIKLMLASPEDIRSWSHGEVKRPETLNYRTLKPEKDGLFCAKIFGPIK
CCCCCCCCCHHHEEEEEECCHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEHHHCCCC
DYECLCGKYRGKRYEGKICEKCGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGT
CHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHCCCEEEECCEEEEEEECCCHHHHHH
LLNLTSRDVERVAYFESYLVIEYPNEEEEEKFEKDEHTIPLNDGISTKWVKLHVVNEEEF
HHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHCCCCEECCCCCCCCEEEEEEEECHHHH
EEKYAFTIDEKYEHGMGAEILKEVLSKLDLDAYSRKLKEIVKPYSIGFEDLGKEIEQKYK
HHHHEEEECHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHH
NLYQKLIKVIADDFRAYGVEIKGLEDHGLSLEQAIHRILNEELYLNVETGEISLEDCGDS
HHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHCCCEEEEEEECCEEEHHHCCCC
CLTGRDALKEYYERVREHKKDIPIFEKIKEDIRSTVLREISEARIRKALRTLQLVEGFKK
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGNRPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDFYRRVINRNNRLKRLIELNAPD
CCCCCCEEEEEEHHCCCCCCCCEEEECCCCEECCHHHHHHHHHHCCCHHHHHHHHCCCCC
IIIRNEKRMLQEAVDALIDNGKRGNPVKQNGRPLKSLADYLKGKQGRFRQNLLGKRVDYS
EEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCC
GRSVIVVGPELQMHQCGLPKIMALELFKPFVYRRLEEKGYATSIKHAKRLVEQKTPEVWE
CCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
CLEEVVKEHPVLLNRAPTLHRPSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHV
HHHHHHHHCCEEECCCCCCCCCCHHHCCCEEECCCEEEEECEECCCCCCCCCCCCEEEEE
PLGIEAQLESYILMLSTQNVLSPAHGKPLTMPSQDMVLGTYYITHDPIPGRKGEGKAFGT
CCCCHHHHCCEEEEEECCHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCH
FEEVLKALELGHVDIHAKIKVKVGNEWIETTPGRVLFNSIMPEGQPFVNKTLDKKGLSKL
HHHHHHHHHCCCEEEEEEEEEEECCCHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
ITELYIRVGNEETVKFLDRVKELGFLRSTLAGISIGVEDLQVPKAKKKIIEEALKKTEEI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHH
WNQYVQGIITNKERYNRIIDVWSEATNLVSKAMFEEIEKSKRIENGKEYPGTFNPIYMMA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
ISGARGNRDQIRQLAGMRGLMAKHSGEFIETPIISNFREGLSVLEYFISTYGARKGLADT
EECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ALKTAFAGYLTRRLVDVAQDITITERDCGTVKGFEMEPIVEAGEERVPLKDRIFGRVLAE
HHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
DVKDPYTGEIIARRNEVIDEKLAEKITKAGIEKVRVRSPLTCEAKHGVCAMCYGWDLSQR
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEECCCCEEEEEECCCCCCC
KIVSVGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAQKVQSFVKAESDGKVKFYNVKLI
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEE
VNRKGEKINISKDAAIGIVDEEGRLLERHTIPYGARILVEEGQEVKAETKLADWDPFNTY
EECCCCEEEECCCCEEEEECCCCCEEHHCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCE
IIAEVGGKVELRDIILDVTVREERDPITGKTASVISFMRPRDAMLHTPRIAVITEDGKEY
EEEECCCEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHCCCCEEEEEECCCCEE
IYDLPVNAILNIPPEKISLEWRVCPTCSESEETTIQHQYYVVKDLEVQPGDILARIPKET
EEECCCHHEECCCCHHEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHCCHHH
AKVRDIVGGLPRVEELFEARKPKNPAILSEIDGYVKIYEDADEVIIFNPRTGETAKYSIK
HHHHHHHCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCEEEECCCCCCCEEEEEC
KDELILVRHGQFVKKGQKITETKVAEIDGQVRIKGRGFKVIVYNPETGLQREYFVPKGKF
CCCEEEEECCHHHHCCCHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCEEECCCCCE
LLVKEGDFVKAGDQLTDGTPVPEEILRIKGIEELEKFLLKEVQMVYKLQGVDINDKHFEI
EEEECCCEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
IIKQMLKKVRIIDPGDSRFLVGEEVDKEELEEEIQRIKLEGGKLPKAEPVLVGITRAALS
HHHHHHHHCEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHH
TRSWISAASFQETTRVLTDASVEGKIDELRGLKENVIIGNIIPAGTGVDEYREVDVIPAE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHCEEEEECCCCCCCCHHHHCCCCCCCH
EKVLEEKKEPKEGS
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10198119 [H]