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The map label for this gene is exbD

Identifier: 15606881

GI number: 15606881

Start: 1292807

End: 1293205

Strand: Direct

Name: exbD

Synonym: aq_1839

Alternate gene names: 15606881

Gene position: 1292807-1293205 (Clockwise)

Preceding gene: 15606879

Following gene: 15607140

Centisome position: 83.34

GC content: 41.85

Gene sequence:

>399_bases
ATGATTATAGTAAGAAGTATGGAAGAAAAAGAGATAAGCTCCATGAACGTAATACCCCTCGTTGACATAATGCTCGTACT
ACTCACGATAGTCCTCACCACCGCTACATTTATAGCAAAAGGTGAAATCCCCGTAGAACTCCCAGAGGCAAAGTCCGGAA
AAGCGGTTCAGCCTCAAGAAAGTGTAGTGATAACGATAACAAAGGAGGGAAAGATTTACCTCAAAAGTAGAGAAGTGTCC
TACGAGGAACTGAAAGAATTCCTGAAAACCCTAAACAGACAAACACCCGTAGAGATTAACGCGGACAAAAACGCGAAACT
TGAGAACTTCGTGAAGGTGTTTGACCTGCTGAACCAGTACGGTTTTAAGAACGTAAATCTTTTGGTGAAGAAGGAATGA

Upstream 100 bases:

>100_bases
ACACCTCTTTCCTTTAAAAAGCTTTCGAGTTTTTCGTCCCTGTCGTCTATTACCACGAAGTCGTTTCCCGATCCCTGTAG
CTTCCAGAATTCCATAAAAG

Downstream 100 bases:

>100_bases
GTTAAATTATTCTTTATGGGCGAAAAGGAGTTAAAAATTCAGGGCATGACGTGCCAGCATTGTGTAAACACCGTAAAAAG
AGCATTGAGTGAAGTTGAAG

Product: biopolymer transport ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MIIVRSMEEKEISSMNVIPLVDIMLVLLTIVLTTATFIAKGEIPVELPEAKSGKAVQPQESVVITITKEGKIYLKSREVS
YEELKEFLKTLNRQTPVEINADKNAKLENFVKVFDLLNQYGFKNVNLLVKKE

Sequences:

>Translated_132_residues
MIIVRSMEEKEISSMNVIPLVDIMLVLLTIVLTTATFIAKGEIPVELPEAKSGKAVQPQESVVITITKEGKIYLKSREVS
YEELKEFLKTLNRQTPVEINADKNAKLENFVKVFDLLNQYGFKNVNLLVKKE
>Mature_132_residues
MIIVRSMEEKEISSMNVIPLVDIMLVLLTIVLTTATFIAKGEIPVELPEAKSGKAVQPQESVVITITKEGKIYLKSREVS
YEELKEFLKTLNRQTPVEINADKNAKLENFVKVFDLLNQYGFKNVNLLVKKE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=28.2258064516129, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EXBD_AQUAE (O67694)

Other databases:

- EMBL:   AE000657
- PIR:   D70458
- RefSeq:   NP_214261.1
- ProteinModelPortal:   O67694
- SMR:   O67694
- GeneID:   1193501
- GenomeReviews:   AE000657_GR
- KEGG:   aae:aq_1839
- NMPDR:   fig|224324.1.peg.1276
- HOGENOM:   HBG729503
- OMA:   FAIQIER
- BioCyc:   AAEO224324:AQ_1839-MONOMER
- InterPro:   IPR003400

Pfam domain/function: PF02472 ExbD

EC number: NA

Molecular weight: Translated: 14968; Mature: 14968

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xe7137f8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVRSMEEKEISSMNVIPLVDIMLVLLTIVLTTATFIAKGEIPVELPEAKSGKAVQPQE
CEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
SVVITITKEGKIYLKSREVSYEELKEFLKTLNRQTPVEINADKNAKLENFVKVFDLLNQY
CEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHC
GFKNVNLLVKKE
CCCCEEEEEECH
>Mature Secondary Structure
MIIVRSMEEKEISSMNVIPLVDIMLVLLTIVLTTATFIAKGEIPVELPEAKSGKAVQPQE
CEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
SVVITITKEGKIYLKSREVSYEELKEFLKTLNRQTPVEINADKNAKLENFVKVFDLLNQY
CEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHC
GFKNVNLLVKKE
CCCCEEEEEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320