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The map label for this gene is yhcK [H]

Identifier: 15606624

GI number: 15606624

Start: 1038417

End: 1039127

Strand: Direct

Name: yhcK [H]

Synonym: aq_1455

Alternate gene names: 15606624

Gene position: 1038417-1039127 (Clockwise)

Preceding gene: 15606623

Following gene: 15606626

Centisome position: 66.94

GC content: 43.18

Gene sequence:

>711_bases
ATGCGGGAAGACGTAAAACTTCGCCTCTTGATGAACATAATTGATGAAGTAACGAGAAAGTACAACGAACTACTACACAA
CTACAAAGTTCTTTTGAAAGAAACGGAGTTCGAAGCTACCCACGATCCTCTCACAGGCTTGTTCAACAGAACCGCACTCC
AGCAACTCTTTAAATACGAAAAGCAAAGGGCGGACGTTTTGGGAAAAAAGGTGGCCTTCCTGTTTATAGACCTTGACAAC
TTCAAGGAAGTTAACGATAGATACGGACACGCTGAGGGGGACAGGGTACTGAAGGATATAGCCCGCATAATAAGAGAAAG
CATCAGGGGGACGGATATAGCGGTAAGGATAGGGGGAGACGAGTTTTTGATAATACTGCCCAACAGCAACATAGAAACTG
CAAAGAGGGTAGGGGAAAGGATAAAGAACGCAATAGAGGAGACCTTTAAGGATTACGGAATTTCTGCGAGTTACGGTATT
TCTATTTACCCCAATGAAGGTGAAACCTTAGAAGAACTCATTAACTTAGCTGACAGCAGAATGTATCAAATGAAGAGGGA
AAAGAAGCTAAAGACCGGGCGGTATCTTAAAGGGAACGTTCATAAGGGGATTTTCCTCCTCCTGCTTCACTATCATTGCG
TAAACTCCGAAACAGTACTTTCCTACTTCAACAACTCTTCCAACTCTTATACCTGCGTCCTCCAGAATTAA

Upstream 100 bases:

>100_bases
GCTTTGCTACTTACGGGGAGATAGGACCCGATAAGGACTTCAGAAAGGTAAAGCTTTACAACGAAACTGCAACCATTGTA
TCTTTAAAGGAGAAGGAGGT

Downstream 100 bases:

>100_bases
TCCAACTTCCCATTCGGAGTAAACTTCTTCCGGCGGGGGTCCTTTGTCCCTCTCCTCCTTCTTCCAGTCTATAATGGCAA
GGTAGGCAAAGGGCTTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MREDVKLRLLMNIIDEVTRKYNELLHNYKVLLKETEFEATHDPLTGLFNRTALQQLFKYEKQRADVLGKKVAFLFIDLDN
FKEVNDRYGHAEGDRVLKDIARIIRESIRGTDIAVRIGGDEFLIILPNSNIETAKRVGERIKNAIEETFKDYGISASYGI
SIYPNEGETLEELINLADSRMYQMKREKKLKTGRYLKGNVHKGIFLLLLHYHCVNSETVLSYFNNSSNSYTCVLQN

Sequences:

>Translated_236_residues
MREDVKLRLLMNIIDEVTRKYNELLHNYKVLLKETEFEATHDPLTGLFNRTALQQLFKYEKQRADVLGKKVAFLFIDLDN
FKEVNDRYGHAEGDRVLKDIARIIRESIRGTDIAVRIGGDEFLIILPNSNIETAKRVGERIKNAIEETFKDYGISASYGI
SIYPNEGETLEELINLADSRMYQMKREKKLKTGRYLKGNVHKGIFLLLLHYHCVNSETVLSYFNNSSNSYTCVLQN
>Mature_236_residues
MREDVKLRLLMNIIDEVTRKYNELLHNYKVLLKETEFEATHDPLTGLFNRTALQQLFKYEKQRADVLGKKVAFLFIDLDN
FKEVNDRYGHAEGDRVLKDIARIIRESIRGTDIAVRIGGDEFLIILPNSNIETAKRVGERIKNAIEETFKDYGISASYGI
SIYPNEGETLEELINLADSRMYQMKREKKLKTGRYLKGNVHKGIFLLLLHYHCVNSETVLSYFNNSSNSYTCVLQN

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=36.4161849710983, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1788381, Length=160, Percent_Identity=33.125, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=155, Percent_Identity=36.1290322580645, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=36.1290322580645, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787541, Length=151, Percent_Identity=35.7615894039735, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=28.9617486338798, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=34.1176470588235, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=36.5269461077844, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787816, Length=181, Percent_Identity=33.7016574585635, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=27.2189349112426, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=35.6687898089172, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=171, Percent_Identity=26.9005847953216, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=108, Percent_Identity=34.2592592592593, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787056, Length=111, Percent_Identity=34.2342342342342, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 27375; Mature: 27375

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREDVKLRLLMNIIDEVTRKYNELLHNYKVLLKETEFEATHDPLTGLFNRTALQQLFKYE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
KQRADVLGKKVAFLFIDLDNFKEVNDRYGHAEGDRVLKDIARIIRESIRGTDIAVRIGGD
HHHHHHHHHEEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
EFLIILPNSNIETAKRVGERIKNAIEETFKDYGISASYGISIYPNEGETLEELINLADSR
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
MYQMKREKKLKTGRYLKGNVHKGIFLLLLHYHCVNSETVLSYFNNSSNSYTCVLQN
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure
MREDVKLRLLMNIIDEVTRKYNELLHNYKVLLKETEFEATHDPLTGLFNRTALQQLFKYE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
KQRADVLGKKVAFLFIDLDNFKEVNDRYGHAEGDRVLKDIARIIRESIRGTDIAVRIGGD
HHHHHHHHHEEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
EFLIILPNSNIETAKRVGERIKNAIEETFKDYGISASYGISIYPNEGETLEELINLADSR
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
MYQMKREKKLKTGRYLKGNVHKGIFLLLLHYHCVNSETVLSYFNNSSNSYTCVLQN
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]