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The map label for this gene is yddV [C]

Identifier: 15605926

GI number: 15605926

Start: 292832

End: 293572

Strand: Direct

Name: yddV [C]

Synonym: aq_429

Alternate gene names: 15605926

Gene position: 292832-293572 (Clockwise)

Preceding gene: 15605922

Following gene: 15605931

Centisome position: 18.88

GC content: 41.3

Gene sequence:

>741_bases
GTGGAACTAGATAAATACTTAGTTTTAGGTTTTGCAACTCTTTACGCACTCTTTATGTTGCTCACGAAAGACATCTTCGT
TAAGTACCTGTCCTCCCTTTACGCGGTTTCCTTTATGCTCATTTACATGTCTTACTACCTCGAGGGTGTTAACTTTCCCA
GACTTTACGTTTACGGATTCAGGGTTGTCGGGTTTATAATGCTCGCTTACACTTTCTTCGAGAATTATAAACTTATAAAA
CTCCTCAGAAATCTGGAAAAGAGAACGTACATAGATTCTTTAACGGGTGTTTACAACAGGAAGTTTCTCGAGGAGATTTT
TAAGCTCGAGAAGGAAAAGTACAGGACTTTCAGGAAGGAGTTCTGCATAATTTTCATAGATCTTGATAACTTCAAGGAAG
TCAACGACAGGTACGGACACATGGAGGGGGATAAGGTTTTAAAACGGGTTGCCGAATTGATCAAGAAAAGCGTAAGGAAG
GAAGATTACGTCATAAGGTACGGAGGGGACGAGTTCGTGATAATAACGGAGGCCCCGAGGGGAGACGTCCTGAGCATAAT
GTCAAGACTTCAGGACGTCATAAAGATAAAGTACAAGGAAGTTGAGGTAACAGCCTCTATAGGAAGTGCCTGCTTTCCGA
ACGACGGAAAAGAACTGGAAGAGCTGATAAAGAAAGCTGACGAAAGGATGTACAGAATTAAGAAGATGAAGAACGAACTA
CTCAAGCTTAATAAAGGGTAG

Upstream 100 bases:

>100_bases
CGTCCTCGCCGAGGTAATCCGAGGAAAAGTCTCCCAGTTTCCTCACGAGCCAAAGCGTTTTAACACCCATGGTAAAATTC
TACCAAGGGGTGGATAAAGT

Downstream 100 bases:

>100_bases
TATTTCTTTAAGGTCTATGTACCTGTCGCAGGCATTCACAAGTTCTATGGAAGAGCTTTCCTTTGTGGAGACGCATATAA
CCTCTTTTCCGAAGTTTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MELDKYLVLGFATLYALFMLLTKDIFVKYLSSLYAVSFMLIYMSYYLEGVNFPRLYVYGFRVVGFIMLAYTFFENYKLIK
LLRNLEKRTYIDSLTGVYNRKFLEEIFKLEKEKYRTFRKEFCIIFIDLDNFKEVNDRYGHMEGDKVLKRVAELIKKSVRK
EDYVIRYGGDEFVIITEAPRGDVLSIMSRLQDVIKIKYKEVEVTASIGSACFPNDGKELEELIKKADERMYRIKKMKNEL
LKLNKG

Sequences:

>Translated_246_residues
MELDKYLVLGFATLYALFMLLTKDIFVKYLSSLYAVSFMLIYMSYYLEGVNFPRLYVYGFRVVGFIMLAYTFFENYKLIK
LLRNLEKRTYIDSLTGVYNRKFLEEIFKLEKEKYRTFRKEFCIIFIDLDNFKEVNDRYGHMEGDKVLKRVAELIKKSVRK
EDYVIRYGGDEFVIITEAPRGDVLSIMSRLQDVIKIKYKEVEVTASIGSACFPNDGKELEELIKKADERMYRIKKMKNEL
LKLNKG
>Mature_246_residues
MELDKYLVLGFATLYALFMLLTKDIFVKYLSSLYAVSFMLIYMSYYLEGVNFPRLYVYGFRVVGFIMLAYTFFENYKLIK
LLRNLEKRTYIDSLTGVYNRKFLEEIFKLEKEKYRTFRKEFCIIFIDLDNFKEVNDRYGHMEGDKVLKRVAELIKKSVRK
EDYVIRYGGDEFVIITEAPRGDVLSIMSRLQDVIKIKYKEVEVTASIGSACFPNDGKELEELIKKADERMYRIKKMKNEL
LKLNKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=182, Percent_Identity=37.3626373626374, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=33.7349397590361, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=33.9393939393939, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87081881, Length=163, Percent_Identity=33.1288343558282, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1786584, Length=205, Percent_Identity=27.3170731707317, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=149, Percent_Identity=31.5436241610738, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=183, Percent_Identity=31.6939890710383, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=32.2784810126582, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=31.6770186335404, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=27.3809523809524, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=34.7826086956522, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=28.9017341040462, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=33.9506172839506, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 29250; Mature: 29250

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELDKYLVLGFATLYALFMLLTKDIFVKYLSSLYAVSFMLIYMSYYLEGVNFPRLYVYGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RVVGFIMLAYTFFENYKLIKLLRNLEKRTYIDSLTGVYNRKFLEEIFKLEKEKYRTFRKE
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCIIFIDLDNFKEVNDRYGHMEGDKVLKRVAELIKKSVRKEDYVIRYGGDEFVIITEAPR
HEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCC
GDVLSIMSRLQDVIKIKYKEVEVTASIGSACFPNDGKELEELIKKADERMYRIKKMKNEL
CHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKLNKG
HHCCCC
>Mature Secondary Structure
MELDKYLVLGFATLYALFMLLTKDIFVKYLSSLYAVSFMLIYMSYYLEGVNFPRLYVYGF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
RVVGFIMLAYTFFENYKLIKLLRNLEKRTYIDSLTGVYNRKFLEEIFKLEKEKYRTFRKE
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCIIFIDLDNFKEVNDRYGHMEGDKVLKRVAELIKKSVRKEDYVIRYGGDEFVIITEAPR
HEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCC
GDVLSIMSRLQDVIKIKYKEVEVTASIGSACFPNDGKELEELIKKADERMYRIKKMKNEL
CHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKLNKG
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]