Click here to switch to the map view.

The map label for this gene is torD

Identifier: 15603659

GI number: 15603659

Start: 2020370

End: 2020960

Strand: Direct

Name: torD

Synonym: PM1794

Alternate gene names: 15603659

Gene position: 2020370-2020960 (Clockwise)

Preceding gene: 15603658

Following gene: 15603665

Centisome position: 89.5

GC content: 41.79

Gene sequence:

>591_bases
ATGATGCCGTTTTCCCGTGAAGAACGCCAATTTGTCTATACTTGGCTGAGCAATATGCTTGGTCATGAGCTTTCCGCTAG
CCAATTAGCGCAATATCAACAAGGTCTATTTGATGATTTCTTTGCGTTTCTCACGGAGCAAGGCTTTCAAGCACAAGTAG
AAGGTATTCAACAGCAATTACAGCAGTTAAAAACAGTTGAATTGGCACATTTGGAATTGGCAGCGGATTACACGCAGTTA
TTTCTGTTAGACGGTAGCAGTAGTGCGTTACCTTATGCCTCTGTGTATTTACCCGAGGCGCAGCTGACTTGCCATTTTAC
TTTTTTGGAGGCATTGCTCGTGCGTTTTCAGTTACAACTGAATCGGGATAAGCCTGAGCCTAGCGATCATTTGTGTGTCT
ATTTAGAATTACTACGTCAGCTTGCTGAAGTAGATGACATGAAAACCTATCGGCAACTGATCCAAGATGCACTGTTACCT
TGGTTATTACCGTTCAATGACAAAGTACAGCGAGTAAAAACACGCACCACGTTTTATCAACAGGTCGTCGTGTTGTTGAT
TTTGTTATTACAAGCAGATTGTCAAAATTAA

Upstream 100 bases:

>100_bases
CGCAAGCGGTATCTGCCAATACTTGTTTGGTCAATATTGAGAAATTTGTGGGACAAGCACCTGCGGTAACGGGTTTCCAT
GGTCCACATGAGGTCGCCCT

Downstream 100 bases:

>100_bases
GGGACCCCTCATCAACAAGAAAGCCCGGCATGTGTCGGGCTTTTTTCTTATGAATATTTATTGCCAATTCGGGCTAGGTT
TTATTTAAAATAAGCTACGA

Product: chaperone protein TorD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MMPFSREERQFVYTWLSNMLGHELSASQLAQYQQGLFDDFFAFLTEQGFQAQVEGIQQQLQQLKTVELAHLELAADYTQL
FLLDGSSSALPYASVYLPEAQLTCHFTFLEALLVRFQLQLNRDKPEPSDHLCVYLELLRQLAEVDDMKTYRQLIQDALLP
WLLPFNDKVQRVKTRTTFYQQVVVLLILLLQADCQN

Sequences:

>Translated_196_residues
MMPFSREERQFVYTWLSNMLGHELSASQLAQYQQGLFDDFFAFLTEQGFQAQVEGIQQQLQQLKTVELAHLELAADYTQL
FLLDGSSSALPYASVYLPEAQLTCHFTFLEALLVRFQLQLNRDKPEPSDHLCVYLELLRQLAEVDDMKTYRQLIQDALLP
WLLPFNDKVQRVKTRTTFYQQVVVLLILLLQADCQN
>Mature_196_residues
MMPFSREERQFVYTWLSNMLGHELSASQLAQYQQGLFDDFFAFLTEQGFQAQVEGIQQQLQQLKTVELAHLELAADYTQL
FLLDGSSSALPYASVYLPEAQLTCHFTFLEALLVRFQLQLNRDKPEPSDHLCVYLELLRQLAEVDDMKTYRQLIQDALLP
WLLPFNDKVQRVKTRTTFYQQVVVLLILLLQADCQN

Specific function: Involved in the biogenesis of torA. Acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. TorD subfamily

Homologues:

Organism=Escherichia coli, GI1787232, Length=205, Percent_Identity=30.7317073170732, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TORD_PASMU (Q9CK40)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246733.1
- ProteinModelPortal:   Q9CK40
- SMR:   Q9CK40
- GeneID:   1245141
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1794
- NMPDR:   fig|272843.1.peg.1795
- HOGENOM:   HBG662677
- OMA:   NVDINHA
- ProtClustDB:   PRK04976
- BioCyc:   PMUL272843:PM1794-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01150
- InterPro:   IPR023069
- InterPro:   IPR020945

Pfam domain/function: PF02613 Nitrate_red_del

EC number: NA

Molecular weight: Translated: 22829; Mature: 22829

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPFSREERQFVYTWLSNMLGHELSASQLAQYQQGLFDDFFAFLTEQGFQAQVEGIQQQL
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QQLKTVELAHLELAADYTQLFLLDGSSSALPYASVYLPEAQLTCHFTFLEALLVRFQLQL
HHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHH
NRDKPEPSDHLCVYLELLRQLAEVDDMKTYRQLIQDALLPWLLPFNDKVQRVKTRTTFYQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QVVVLLILLLQADCQN
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMPFSREERQFVYTWLSNMLGHELSASQLAQYQQGLFDDFFAFLTEQGFQAQVEGIQQQL
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QQLKTVELAHLELAADYTQLFLLDGSSSALPYASVYLPEAQLTCHFTFLEALLVRFQLQL
HHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHH
NRDKPEPSDHLCVYLELLRQLAEVDDMKTYRQLIQDALLPWLLPFNDKVQRVKTRTTFYQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QVVVLLILLLQADCQN
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100