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The map label for this gene is rpoE [H]

Identifier: 15603654

GI number: 15603654

Start: 2013067

End: 2013642

Strand: Reverse

Name: rpoE [H]

Synonym: PM1789

Alternate gene names: 15603654

Gene position: 2013642-2013067 (Counterclockwise)

Preceding gene: 15603655

Following gene: 15603653

Centisome position: 89.2

GC content: 40.45

Gene sequence:

>576_bases
ATGGCTGAACAGCTAACAGATCAGGCTTTGGTAGAAAGAGTACAGCAAGGAGATAAAAAGGCCTTTAATTTATTGGTTTC
TCGTTATCAAAATAAAGTGGCTGGTTTGCTGACTCGCTATGTGTCACAAAACGACATTCCTGATGTTGTACAAGAATCAT
TTATCAAAGCATATCGCTCGATTGATTCTTTTCGTGGTGACAGTGCTTTCTACACATGGCTATATCGAATCGCCGTCAAT
ACGGCAAAGAATTATTTAACTGCTCAAGGACGTCGCCCTCCTAATGAAGATATCTTAGCGGAAGAGGCTGAAAGTTATGA
AATGGGCAGTAACTTACGGGATGTGGATACCCCGGAAAATGAAATGTTATCCAGCGAATTAAAGAAAATTGTATTTGATA
CAATAAACGGTTTACAAGAAGATTTAAGAACGGCCATTACACTCCGCGAGCTTGAGGGCTTAAGCTACGAAGAGATCGCA
GAAATTATGGATTGTCCAGTTGGAACTGTTCGCTCTCGAATTTTCCGTGCGCGTGAAATTATCGAAAGTAAAGTGCAACC
TATGTTGCAACGTTAA

Upstream 100 bases:

>100_bases
AAAAAAGATTGAACTTTTTTTATTCGGCACCGTCTAACTGTTTGCAAGAGCTTGCTGTCTTTGAATATTAAGGCTTGTTA
GAGGTGATATAAGAGGTTAT

Downstream 100 bases:

>100_bases
ATACAATACAAAAAATCCAAAACCAAGCAAAAGTTGGAGTGTCCAAATGCAAAAAGAGTTACTTTCAGCCTATATTGATG
GTGAACAAGTCAGCGCTGAA

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MAEQLTDQALVERVQQGDKKAFNLLVSRYQNKVAGLLTRYVSQNDIPDVVQESFIKAYRSIDSFRGDSAFYTWLYRIAVN
TAKNYLTAQGRRPPNEDILAEEAESYEMGSNLRDVDTPENEMLSSELKKIVFDTINGLQEDLRTAITLRELEGLSYEEIA
EIMDCPVGTVRSRIFRAREIIESKVQPMLQR

Sequences:

>Translated_191_residues
MAEQLTDQALVERVQQGDKKAFNLLVSRYQNKVAGLLTRYVSQNDIPDVVQESFIKAYRSIDSFRGDSAFYTWLYRIAVN
TAKNYLTAQGRRPPNEDILAEEAESYEMGSNLRDVDTPENEMLSSELKKIVFDTINGLQEDLRTAITLRELEGLSYEEIA
EIMDCPVGTVRSRIFRAREIIESKVQPMLQR
>Mature_190_residues
AEQLTDQALVERVQQGDKKAFNLLVSRYQNKVAGLLTRYVSQNDIPDVVQESFIKAYRSIDSFRGDSAFYTWLYRIAVNT
AKNYLTAQGRRPPNEDILAEEAESYEMGSNLRDVDTPENEMLSSELKKIVFDTINGLQEDLRTAITLRELEGLSYEEIAE
IMDCPVGTVRSRIFRAREIIESKVQPMLQR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=191, Percent_Identity=74.3455497382199, Blast_Score=301, Evalue=2e-83,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21921; Mature: 21790

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQLTDQALVERVQQGDKKAFNLLVSRYQNKVAGLLTRYVSQNDIPDVVQESFIKAYRS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IDSFRGDSAFYTWLYRIAVNTAKNYLTAQGRRPPNEDILAEEAESYEMGSNLRDVDTPEN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHH
EMLSSELKKIVFDTINGLQEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
IESKVQPMLQR
HHHHHHHHHCC
>Mature Secondary Structure 
AEQLTDQALVERVQQGDKKAFNLLVSRYQNKVAGLLTRYVSQNDIPDVVQESFIKAYRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IDSFRGDSAFYTWLYRIAVNTAKNYLTAQGRRPPNEDILAEEAESYEMGSNLRDVDTPEN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHH
EMLSSELKKIVFDTINGLQEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
IESKVQPMLQR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]