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The map label for this gene is ycjN [H]

Identifier: 15603627

GI number: 15603627

Start: 1985323

End: 1986678

Strand: Reverse

Name: ycjN [H]

Synonym: PM1762

Alternate gene names: 15603627

Gene position: 1986678-1985323 (Counterclockwise)

Preceding gene: 15603628

Following gene: 15603626

Centisome position: 88.0

GC content: 38.57

Gene sequence:

>1356_bases
ATGAAATTGAAAAAACTCTTTTCTGTTTTATTACCTATCATAGCTGGTGCTAGCATATTAACCGGTTGTAACGAAGAAAA
TAAAACCACACAAGCGAATACGGCTATGCCTAAAGAGGGGCAAGAATTAGCAGGTAATATCACCTTTTGGCATTCATTTA
CTCAAGGTCCTCGCTTAGAAGTTATCCAACAAGCAGCAAAAGAATTTGAACAAAAAAATCCTAAAGTCAAAATTAAAATT
GAAACCTTTTCTTGGAATGATTTCTATACCAAATGGACGACTGGGCTTTCTTCCGGTAATGTGCCGGATTTAAGTACAGC
CTTACCGAATCAAGTTGTCGAAATGATTAACTTCGGTGCGCTTCAGCCTTTAGGCGATCTGATTGATAGTATTGGGCGTG
ATAAATTCGCTGAGGCAGCCATTAGCGAAGGCACCGTACAAGGGCAAAACTATTCTATTCCGCTTTATTCACACGCCCAA
GTAATGTGGATACGTAAAGATCTCTTGGAAAAACACCAATTACCTGTACCAAAAACATGGAATGAACTTTACGAAACCGC
TAAAAAATTAACTCAAGACGGTGTGTATGGGCTCTCTGTGCCGATGGGAAGCAATGACTTTATTGCAACACGTTTCTTAA
ATCTTTATGTGCGCAGTGGGGGTGGAAGCTTACTGACGAAAGATTTAAAAGTCGATCTTACGAATCCATTAGCACAGGAA
GGCATTAAGTATTGGGTGAAAATGTATAAAGATACCTCACCAAAAGACTCCGTAAACTATAATGTCTTACAGCAAGCAAC
GCTTTATTATCAAGGTAAAACCGCCTTTGATTTTAACTCTGGTTTCCAAATCGGGGGCGTAAAAGCAAATTCGCCACAAT
TATTAGAGTTTATTGATGCTTACCCTGTACCAAAAATCAATGAAAATGATCCAACACCGGCCCTGGAAACCGCCAATATT
CCAATGGTAATTTGGAAAAACTCAAAACACCCAGATGTCTCAAAAGCTTTTATGAAAACACTTTATGAGAAAGAGCGTTA
TATTTCTTTCCTAAAAGCTGTTCCAGTAGGTATGTTACCAGCTATCAAGGGCATTTCTGACGACCCGGCTTATAAAGACG
AACCAATTATCAAGCAATTTGAACATGCCGAAAAAGTCATTACAGAAGCCGTTCAACTTGGAACAGCCATTGGTTATGAA
CATGGACCAAGTGTACAAGCTGGGATCTTAACGAATCAACATATCATTGAAAAAATGTTCCAAGACATTGTGATTAATGG
AACTGATCCAATGGTGGCTGCACAAAAAGCAGAAAAAGAACTAAACAGTTTATTAGAGGCTGTTATCACAAAATAA

Upstream 100 bases:

>100_bases
TGAAATATGCTCACTTTTTCGATCCTCAAACAGAAAAATCATTATTGCAACTTTAATTGATGATTTTAAATTTTCTAAAT
AAGAATAGGAGATGCTCTCT

Downstream 100 bases:

>100_bases
AAACAACCCAATCCCCTTAATATCTTGCCAATTTACTTATGTAAATAAGTATTAGGGGGGCTTTGTCTAAAATTTCACAA
TGTCGCATATCTTATGGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MKLKKLFSVLLPIIAGASILTGCNEENKTTQANTAMPKEGQELAGNITFWHSFTQGPRLEVIQQAAKEFEQKNPKVKIKI
ETFSWNDFYTKWTTGLSSGNVPDLSTALPNQVVEMINFGALQPLGDLIDSIGRDKFAEAAISEGTVQGQNYSIPLYSHAQ
VMWIRKDLLEKHQLPVPKTWNELYETAKKLTQDGVYGLSVPMGSNDFIATRFLNLYVRSGGGSLLTKDLKVDLTNPLAQE
GIKYWVKMYKDTSPKDSVNYNVLQQATLYYQGKTAFDFNSGFQIGGVKANSPQLLEFIDAYPVPKINENDPTPALETANI
PMVIWKNSKHPDVSKAFMKTLYEKERYISFLKAVPVGMLPAIKGISDDPAYKDEPIIKQFEHAEKVITEAVQLGTAIGYE
HGPSVQAGILTNQHIIEKMFQDIVINGTDPMVAAQKAEKELNSLLEAVITK

Sequences:

>Translated_451_residues
MKLKKLFSVLLPIIAGASILTGCNEENKTTQANTAMPKEGQELAGNITFWHSFTQGPRLEVIQQAAKEFEQKNPKVKIKI
ETFSWNDFYTKWTTGLSSGNVPDLSTALPNQVVEMINFGALQPLGDLIDSIGRDKFAEAAISEGTVQGQNYSIPLYSHAQ
VMWIRKDLLEKHQLPVPKTWNELYETAKKLTQDGVYGLSVPMGSNDFIATRFLNLYVRSGGGSLLTKDLKVDLTNPLAQE
GIKYWVKMYKDTSPKDSVNYNVLQQATLYYQGKTAFDFNSGFQIGGVKANSPQLLEFIDAYPVPKINENDPTPALETANI
PMVIWKNSKHPDVSKAFMKTLYEKERYISFLKAVPVGMLPAIKGISDDPAYKDEPIIKQFEHAEKVITEAVQLGTAIGYE
HGPSVQAGILTNQHIIEKMFQDIVINGTDPMVAAQKAEKELNSLLEAVITK
>Mature_451_residues
MKLKKLFSVLLPIIAGASILTGCNEENKTTQANTAMPKEGQELAGNITFWHSFTQGPRLEVIQQAAKEFEQKNPKVKIKI
ETFSWNDFYTKWTTGLSSGNVPDLSTALPNQVVEMINFGALQPLGDLIDSIGRDKFAEAAISEGTVQGQNYSIPLYSHAQ
VMWIRKDLLEKHQLPVPKTWNELYETAKKLTQDGVYGLSVPMGSNDFIATRFLNLYVRSGGGSLLTKDLKVDLTNPLAQE
GIKYWVKMYKDTSPKDSVNYNVLQQATLYYQGKTAFDFNSGFQIGGVKANSPQLLEFIDAYPVPKINENDPTPALETANI
PMVIWKNSKHPDVSKAFMKTLYEKERYISFLKAVPVGMLPAIKGISDDPAYKDEPIIKQFEHAEKVITEAVQLGTAIGYE
HGPSVQAGILTNQHIIEKMFQDIVINGTDPMVAAQKAEKELNSLLEAVITK

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=448, Percent_Identity=20.9821428571429, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 50168; Mature: 50168

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKKLFSVLLPIIAGASILTGCNEENKTTQANTAMPKEGQELAGNITFWHSFTQGPRLE
CCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCHHH
VIQQAAKEFEQKNPKVKIKIETFSWNDFYTKWTTGLSSGNVPDLSTALPNQVVEMINFGA
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
LQPLGDLIDSIGRDKFAEAAISEGTVQGQNYSIPLYSHAQVMWIRKDLLEKHQLPVPKTW
CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHH
NELYETAKKLTQDGVYGLSVPMGSNDFIATRFLNLYVRSGGGSLLTKDLKVDLTNPLAQE
HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHEECCCCCEEEECCEEECCCHHHHH
GIKYWVKMYKDTSPKDSVNYNVLQQATLYYQGKTAFDFNSGFQIGGVKANSPQLLEFIDA
HHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCEEEECCCCCEECCEECCCHHHHHHHHC
YPVPKINENDPTPALETANIPMVIWKNSKHPDVSKAFMKTLYEKERYISFLKAVPVGMLP
CCCCCCCCCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AIKGISDDPAYKDEPIIKQFEHAEKVITEAVQLGTAIGYEHGPSVQAGILTNQHIIEKMF
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHH
QDIVINGTDPMVAAQKAEKELNSLLEAVITK
HHHEECCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLKKLFSVLLPIIAGASILTGCNEENKTTQANTAMPKEGQELAGNITFWHSFTQGPRLE
CCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCHHH
VIQQAAKEFEQKNPKVKIKIETFSWNDFYTKWTTGLSSGNVPDLSTALPNQVVEMINFGA
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
LQPLGDLIDSIGRDKFAEAAISEGTVQGQNYSIPLYSHAQVMWIRKDLLEKHQLPVPKTW
CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHH
NELYETAKKLTQDGVYGLSVPMGSNDFIATRFLNLYVRSGGGSLLTKDLKVDLTNPLAQE
HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHEECCCCCEEEECCEEECCCHHHHH
GIKYWVKMYKDTSPKDSVNYNVLQQATLYYQGKTAFDFNSGFQIGGVKANSPQLLEFIDA
HHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCEEEECCCCCEECCEECCCHHHHHHHHC
YPVPKINENDPTPALETANIPMVIWKNSKHPDVSKAFMKTLYEKERYISFLKAVPVGMLP
CCCCCCCCCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AIKGISDDPAYKDEPIIKQFEHAEKVITEAVQLGTAIGYEHGPSVQAGILTNQHIIEKMF
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHH
QDIVINGTDPMVAAQKAEKELNSLLEAVITK
HHHEECCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]