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The map label for this gene is atpD [H]

Identifier: 15603359

GI number: 15603359

Start: 1685352

End: 1686725

Strand: Direct

Name: atpD [H]

Synonym: PM1494

Alternate gene names: 15603359

Gene position: 1685352-1686725 (Clockwise)

Preceding gene: 15603358

Following gene: 15603360

Centisome position: 74.66

GC content: 41.19

Gene sequence:

>1374_bases
ATGGCAACTGGAAAAATTGTACAAATCATCGGTGCGGTTATTGACGTTGAATTCCCACAAGATGCAGTACCAAAAGTATA
TGATGCCTTAAATGTTGAAACAGGTTTAGTGCTTGAAGTTCAACAACAATTAGGTGGTGGTGTAGTTCGCTGTATCGCAA
TGGGATCATCTGATGGATTAAAACGCGGTTTAAGCGTAACAAATACGAATAACCCAATTTCTGTTCCAGTGGGAACGAAA
ACATTGGGTCGTATCATGAACGTATTGGGTGAACCAATCGATGAGCAAGGTGAAATCGGTGCAGAAGAGAATTGGTCTAT
TCACCGTGCGCCACCAAGTTATGAAGAACAATCTAACAGTACTGAACTTTTAGAAACGGGAATTAAAGTTATCGACTTAG
TTTGTCCGTTTGCGAAAGGGGGTAAAGTAGGTTTATTCGGTGGTGCGGGTGTTGGTAAAACCGTCAATATGATGGAATTA
ATCCGTAACATCGCAATTGAGCACTCAGGTTACTCTGTCTTTGCGGGGGTAGGTGAGCGTACGCGTGAAGGTAACGACTT
CTATCATGAGATGAAAGACTCTAACGTATTAGATAAAGTGTCTCTTGTTTATGGTCAAATGAACGAGCCACCAGGTAACC
GTTTACGTGTGGCATTAACAGGCTTAACCATGGCGGAAAAATTCCGTGATGAAGGTCGTGATGTCTTATTCTTCGTTGAT
AATATTTATCGTTATACCCTTGCTGGTACAGAAGTTTCTGCATTATTAGGTCGTATGCCATCTGCGGTAGGTTATCAACC
AACCCTTGCAGAAGAAATGGGTGTTCTGCAAGAGCGTATTACCTCAACCAAAACAGGTTCTATTACTTCTGTTCAAGCCG
TTTACGTGCCTGCCGATGACTTAACTGACCCATCGCCAGCAACCACGTTTGCGCACTTAGACTCAACAGTTGTATTAAGC
CGTCAAATCGCGTCATTAGGTATTTATCCTGCAGTGGATCCATTAGAATCAACTTCTCGTCAGTTAGATCCATTAGTCGT
GGGTGAAGAACACTACAACGTTGCACGTGGTGTACAAACAACCTTACAACGTTATAAAGAATTGAAAGATATTATTGCAA
TTCTTGGTATGGATGAGTTATCTGAAGAAGATAAATTAGTGGTTGCACGTGCACGTAAGATCGAACGTTTCTTATCACAA
CCGTTCTTCGTTGCGGAAGTATTTAATGGTACGCCAGGTAAATATGTTCCATTAAAAGAAACAATTCGTGGCTTTAAAGG
TATTTTAGACGGTGAATATGACCATATCCCAGAACAAGCGTTCTATATGGCGGGTACCATCGACGAAGTATTAGAAAAAG
CGAAAAAATTGTAA

Upstream 100 bases:

>100_bases
TACAGTTAGTCTATAACAAAGCTCGTCAAGCAAGTATTACAAATGAATTAAATGAAATTGTTGCCGGTGCAGCAGCAATT
TAACAAATAGAGGATCGGTA

Downstream 100 bases:

>100_bases
TTGCTTCTGAAAGCAACTAATCAGGCTTGAAGGAGAAAAAATGTCAGTATTTAACTTAACCGTAGTAAGTGCAGAGCAAC
AGATTTTTTCTGGTCAAGTA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MATGKIVQIIGAVIDVEFPQDAVPKVYDALNVETGLVLEVQQQLGGGVVRCIAMGSSDGLKRGLSVTNTNNPISVPVGTK
TLGRIMNVLGEPIDEQGEIGAEENWSIHRAPPSYEEQSNSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLS
RQIASLGIYPAVDPLESTSRQLDPLVVGEEHYNVARGVQTTLQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQ
PFFVAEVFNGTPGKYVPLKETIRGFKGILDGEYDHIPEQAFYMAGTIDEVLEKAKKL

Sequences:

>Translated_457_residues
MATGKIVQIIGAVIDVEFPQDAVPKVYDALNVETGLVLEVQQQLGGGVVRCIAMGSSDGLKRGLSVTNTNNPISVPVGTK
TLGRIMNVLGEPIDEQGEIGAEENWSIHRAPPSYEEQSNSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLS
RQIASLGIYPAVDPLESTSRQLDPLVVGEEHYNVARGVQTTLQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQ
PFFVAEVFNGTPGKYVPLKETIRGFKGILDGEYDHIPEQAFYMAGTIDEVLEKAKKL
>Mature_456_residues
ATGKIVQIIGAVIDVEFPQDAVPKVYDALNVETGLVLEVQQQLGGGVVRCIAMGSSDGLKRGLSVTNTNNPISVPVGTKT
LGRIMNVLGEPIDEQGEIGAEENWSIHRAPPSYEEQSNSTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELI
RNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDN
IYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSR
QIASLGIYPAVDPLESTSRQLDPLVVGEEHYNVARGVQTTLQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQP
FFVAEVFNGTPGKYVPLKETIRGFKGILDGEYDHIPEQAFYMAGTIDEVLEKAKKL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=68.8841201716738, Blast_Score=638, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=396, Percent_Identity=26.2626262626263, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI19913426, Length=396, Percent_Identity=25.5050505050505, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI19913424, Length=345, Percent_Identity=27.2463768115942, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI50345984, Length=398, Percent_Identity=23.3668341708543, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI4757810, Length=398, Percent_Identity=23.3668341708543, Blast_Score=100, Evalue=4e-21,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=88.0434782608696, Blast_Score=834, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=333, Percent_Identity=29.1291291291291, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1790172, Length=340, Percent_Identity=25.5882352941176, Blast_Score=109, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=67.381974248927, Blast_Score=628, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17565854, Length=358, Percent_Identity=27.3743016759777, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=348, Percent_Identity=26.4367816091954, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=405, Percent_Identity=25.4320987654321, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=434, Percent_Identity=23.2718894009217, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=434, Percent_Identity=23.2718894009217, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=427, Percent_Identity=23.1850117096019, Blast_Score=81, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=67.2489082969432, Blast_Score=622, Evalue=1e-179,
Organism=Saccharomyces cerevisiae, GI6319603, Length=389, Percent_Identity=26.9922879177378, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6319370, Length=401, Percent_Identity=24.6882793017456, Blast_Score=106, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=230, Percent_Identity=27.3913043478261, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=67.6724137931034, Blast_Score=626, Evalue=1e-179,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=65.3763440860215, Blast_Score=596, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=350, Percent_Identity=26.5714285714286, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281361666, Length=390, Percent_Identity=26.1538461538462, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24646341, Length=390, Percent_Identity=26.1538461538462, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17136796, Length=390, Percent_Identity=26.1538461538462, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24583988, Length=354, Percent_Identity=25.7062146892655, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583986, Length=354, Percent_Identity=25.7062146892655, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583984, Length=354, Percent_Identity=25.7062146892655, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=27.1604938271605, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24658560, Length=416, Percent_Identity=23.5576923076923, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=52.1739130434783, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49776; Mature: 49645

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKIVQIIGAVIDVEFPQDAVPKVYDALNVETGLVLEVQQQLGGGVVRCIAMGSSDGL
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHEEEHHHHCCCEEEEEEECCCHHH
KRGLSVTNTNNPISVPVGTKTLGRIMNVLGEPIDEQGEIGAEENWSIHRAPPSYEEQSNS
HCCCEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
TELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
TREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
CCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEE
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADD
CHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
LTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLESTSRQLDPLVVGEEHYNVARGVQT
CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEECCHHHHHHHHHHH
TLQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQPFFVAEVFNGTPGKYVPLKE
HHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCEECHHH
TIRGFKGILDGEYDHIPEQAFYMAGTIDEVLEKAKKL
HHHHHHHCCCCCHHCCCCHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
ATGKIVQIIGAVIDVEFPQDAVPKVYDALNVETGLVLEVQQQLGGGVVRCIAMGSSDGL
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHEEEHHHHCCCEEEEEEECCCHHH
KRGLSVTNTNNPISVPVGTKTLGRIMNVLGEPIDEQGEIGAEENWSIHRAPPSYEEQSNS
HCCCEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
TELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGER
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC
TREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVD
CCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEE
NIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADD
CHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
LTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLESTSRQLDPLVVGEEHYNVARGVQT
CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEECCHHHHHHHHHHH
TLQRYKELKDIIAILGMDELSEEDKLVVARARKIERFLSQPFFVAEVFNGTPGKYVPLKE
HHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCEECHHH
TIRGFKGILDGEYDHIPEQAFYMAGTIDEVLEKAKKL
HHHHHHHCCCCCHHCCCCHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA