Click here to switch to the map view.

The map label for this gene is losA

Identifier: 15603008

GI number: 15603008

Start: 1342878

End: 1343546

Strand: Direct

Name: losA

Synonym: PM1143

Alternate gene names: NA

Gene position: 1342878-1343546 (Clockwise)

Preceding gene: 15603007

Following gene: 15603009

Centisome position: 59.49

GC content: 36.47

Gene sequence:

>669_bases
ATGGAACAGTTCCCCCCAATTTTCGTTATCAGCCTCAAAAACTCTCCTCGACGAGATATAATCGCTCAACGGTTAAATGG
TTTAAAACTCAACTTTAAGTTTATTGATGGTATTAATGGCAAAACACTTTCTCAGGATGAATTAAATAACATAGATTACA
CGTTTTACCCACAACGATTTGCTGCTCGTAAACCTCTGACAGTCGGTGAAATAGGTTGTGCTATGAGCCATTTATCTATT
TACCAAATGATGTGCAATGAAAAGATAGCGCGCGCTATTATTCTTGAAGATGATGCGATTGTATCGCACGAATTCGAAGC
AATTGTAAAAGACAGTTTGAAGAAAGTTTCAAAAAATGTCGAAATTTTATTTTATGATCATGGTAAAGCAAAGAGTTATT
GCTGGAAAAAAACACTTGTCGAAAATTACCGTTTAGTTCACTATCGTAAACCCTCTAAAACGTCTAAACGTGCAATCATG
TGTGCAACAGCTTATTTAATTACTTTATCTGGCGCTCAAAAACTCCTACAAATAGCCTATCCTATCCGTATGCCTGCTGA
CTACTTAACTGGTGCTTTACAATTAACTGGACTAAAGGCTTATGGTGTTGAACCACCTTGTGTATTTAAAGGAGCAATTT
CAGAAATTGATGCAATGGAGCAACGCTAA

Upstream 100 bases:

>100_bases
GCTTTAACAAACGTTTTAGTATTCCAAGTACGAAATAAAATATGAAATTAAGTTAAACCCTGTTTTTTACAGGGTTTAAT
TACATATAAGGACGGATCAA

Downstream 100 bases:

>100_bases
CAATGAAATTAAAAAATAAATTACAAATGTTAAGGTTGGGTCTAGGCAAATATTTCCTTGATAAAAAAAACGGATTAAAC
AGAATAACAAATGTTCCTAG

Product: LosA

Products: NA

Alternate protein names: Glycosyl Transferase Family; Glycosyl Transferase Family Protein; Beta1 4-Galactosyltransferase; LPS Biosynthesis Glycosyltransferase; LPS Glycosyltransferase Subfamily; Lipooligosaccharide Biosynthesis Protein LpsA; Beta1 4-Galactosyltransferase Waax; Lacto-N-Neotetraose Biosynthesis Glycosyltransferase LgtB; Lex2B Protein; Glycosyltransferase; LPS Biosynthesis Protein; Glycosyl Transferase; Beta 1 4-Galactosyltransferase; Glycosyltransferase Involved In LPS Biosynthesis

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MEQFPPIFVISLKNSPRRDIIAQRLNGLKLNFKFIDGINGKTLSQDELNNIDYTFYPQRFAARKPLTVGEIGCAMSHLSI
YQMMCNEKIARAIILEDDAIVSHEFEAIVKDSLKKVSKNVEILFYDHGKAKSYCWKKTLVENYRLVHYRKPSKTSKRAIM
CATAYLITLSGAQKLLQIAYPIRMPADYLTGALQLTGLKAYGVEPPCVFKGAISEIDAMEQR

Sequences:

>Translated_222_residues
MEQFPPIFVISLKNSPRRDIIAQRLNGLKLNFKFIDGINGKTLSQDELNNIDYTFYPQRFAARKPLTVGEIGCAMSHLSI
YQMMCNEKIARAIILEDDAIVSHEFEAIVKDSLKKVSKNVEILFYDHGKAKSYCWKKTLVENYRLVHYRKPSKTSKRAIM
CATAYLITLSGAQKLLQIAYPIRMPADYLTGALQLTGLKAYGVEPPCVFKGAISEIDAMEQR
>Mature_222_residues
MEQFPPIFVISLKNSPRRDIIAQRLNGLKLNFKFIDGINGKTLSQDELNNIDYTFYPQRFAARKPLTVGEIGCAMSHLSI
YQMMCNEKIARAIILEDDAIVSHEFEAIVKDSLKKVSKNVEILFYDHGKAKSYCWKKTLVENYRLVHYRKPSKTSKRAIM
CATAYLITLSGAQKLLQIAYPIRMPADYLTGALQLTGLKAYGVEPPCVFKGAISEIDAMEQR

Specific function: Unknown

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193788560, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25204; Mature: 25204

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQFPPIFVISLKNSPRRDIIAQRLNGLKLNFKFIDGINGKTLSQDELNNIDYTFYPQRF
CCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEECCCCCEECHHHCCCCCEEECCHHH
AARKPLTVGEIGCAMSHLSIYQMMCNEKIARAIILEDDAIVSHEFEAIVKDSLKKVSKNV
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCE
EILFYDHGKAKSYCWKKTLVENYRLVHYRKPSKTSKRAIMCATAYLITLSGAQKLLQIAY
EEEEEECCCCCHHHHHHHHHHCEEEEEEECCCCCCHHHHHEEHHHEEEHHHHHHHHHHHC
PIRMPADYLTGALQLTGLKAYGVEPPCVFKGAISEIDAMEQR
CCCCCHHHHHCEEEEECEEECCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQFPPIFVISLKNSPRRDIIAQRLNGLKLNFKFIDGINGKTLSQDELNNIDYTFYPQRF
CCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEECCCCCEECHHHCCCCCEEECCHHH
AARKPLTVGEIGCAMSHLSIYQMMCNEKIARAIILEDDAIVSHEFEAIVKDSLKKVSKNV
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCE
EILFYDHGKAKSYCWKKTLVENYRLVHYRKPSKTSKRAIMCATAYLITLSGAQKLLQIAY
EEEEEECCCCCHHHHHHHHHHCEEEEEEECCCCCCHHHHHEEHHHEEEHHHHHHHHHHHC
PIRMPADYLTGALQLTGLKAYGVEPPCVFKGAISEIDAMEQR
CCCCCHHHHHCEEEEECEEECCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA