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The map label for this gene is yddA [C]

Identifier: 15602937

GI number: 15602937

Start: 1262781

End: 1264538

Strand: Direct

Name: yddA [C]

Synonym: PM1072

Alternate gene names: 15602937

Gene position: 1262781-1264538 (Clockwise)

Preceding gene: 15602935

Following gene: 15602938

Centisome position: 55.94

GC content: 39.99

Gene sequence:

>1758_bases
ATGGATTGGTCACAAGAATTATATGATTCTTTTATTTGGTTACTAAAAAGCCTTTCATTGACAACGTTACTCTTTCCTCT
CACCGTTTATATTTTGGCAAAAACCACGCAATGGGGTCGCCAGTTTTGGCTTTTGGCGGAAGACTATTTCCACCCCAAAC
ACAATCTCTTACCACTGTTTTATTTTATGATTATTGTGTTTTTCAATTTGCTTTCAGTGCGTATCGATATTTTGGTATCA
AACTGGTACAACGCGTTGTACAAATCATTACAAGACATGAATGAAACCGTCTTTTGGCAGCAAATGGTGGTATTTGCCGT
GATCGCCAGTTCAAGTATTACGAACGCTCTACTGACTTACTACTTGAGTAAACGTTTTTTGATCCACTGGCGAATGTGGC
TCAACAATAGAATGCTCAATAAATGGACAGAAAATCAGGCGTATTACAAAACGCAATATGTAGAAGCCCAATTAGATAAC
CCCGATCAACGTATTCAACAAGACGTGAGTTCCTTTGTGTCGACTAGCTTAGATTTTGCAACGGGATTAATTTCTTCTAT
CGTTTCAATCATTGCGTTTACCATTATTTTATGGAATCTCTCTGGACCGATGACCATTGCCAATATTGAAATTCCTCACG
CGATGGTCTTTTTGGTCTTTATTTATGTGCTGTTTAGCAGTATTGTGGCATTTAAAATCGGTCGCCCGTTAATTCAGCTC
AATTTTGCCAATGAACGCTTAAACGCCAACTACCGTTATTCACTTATCCGTCTGAAAGAATATGCTGAAAGCATTGCCTT
TTATCGTGGTGAAAAAATGGAAAAACGTCTATTGACCACACAATTTAATCAGGTGATTGATAACGTTTGGCAAGTAATCT
ACCGCACCTTGAAATTATCCGGTTTTAACTTAATCATTACGCAGATTTCGGTGGTTTTTCCGCTGGTGATTCAAGTGACA
CGTTATTTTCGTCAACAAATCACACTGGGCGATTTAATGCAAACCTCCAGTGCTTTTGGTCGAGTACAATCCTCGTTGTC
TTTTTTCCGTAATTCCTATGATGACTTTGCCGCTTATCGTGCGGTGTTAAATCGTTTAACTGGCTTTCATAGCGCGATTA
AAGCGGCTAATCGCCCAAGCAAATTAGTGTTCACAGAAAGTCGTCATGATATTGGTTTTCATGATCTCAAGGTAGAGACC
CCGCAAGGAAAAACCTTAATTGACAAACTCAACTTACAATTCCCTCTCGGCACATGGTTATTAATTCAAGGACATTCTGG
TGTAGGGAAAACAACCTTGTTAAGAACCATTGCGGGACTATGGCCTTATGCCAGTGGGACAATTCAACGTCCACAACAAG
ATACTCTGTTTCTTTCTCAAAAGCCCTATTTGCCACAAGGTCGCCTACTTGATGCCTTATTTTATCCTGAACTGGCACCT
GAAGACGTGAATGAGCAACAAGTTATAGACATACTCGCGAAAGTACAACTCGGGCATTTAAGCGATAAACTAGAACAAGA
AAATGATTGGACACGGGTACTCTCTTTAGGTGAACAACAACGTCTGTCGTTTGCTCGCATTTTATTGCATAAACCTACTG
TTGTTTTCTTAGATGAAGCCACTGCCAGCATGGATGAAGGACTAGAAGATGCGATGTACCGCTTACTGAAAGATGAATTG
CCTCAGATTACTGTGATCAGTGTTGGACACCGTTCGACGTTAATTCCGCACCATTCACAGCAATTACACATTCAATAA

Upstream 100 bases:

>100_bases
ACTAAAAATTTAACCGTAATCACATTTTTCTTGCTAAAAATGTCAAAATTTTTAACAATACTGGCTTGTTTTTTAAACAT
TATTTCAATTTGGAACAGCT

Downstream 100 bases:

>100_bases
CAAGACAGGGCGTTGTGGAGTCAACGCCTTATGAAATAAAGCAAAAACTCACCGCACTTTTGCCCTCATATCGAAATGAA
AAACTTTGTTAATTGCCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MDWSQELYDSFIWLLKSLSLTTLLFPLTVYILAKTTQWGRQFWLLAEDYFHPKHNLLPLFYFMIIVFFNLLSVRIDILVS
NWYNALYKSLQDMNETVFWQQMVVFAVIASSSITNALLTYYLSKRFLIHWRMWLNNRMLNKWTENQAYYKTQYVEAQLDN
PDQRIQQDVSSFVSTSLDFATGLISSIVSIIAFTIILWNLSGPMTIANIEIPHAMVFLVFIYVLFSSIVAFKIGRPLIQL
NFANERLNANYRYSLIRLKEYAESIAFYRGEKMEKRLLTTQFNQVIDNVWQVIYRTLKLSGFNLIITQISVVFPLVIQVT
RYFRQQITLGDLMQTSSAFGRVQSSLSFFRNSYDDFAAYRAVLNRLTGFHSAIKAANRPSKLVFTESRHDIGFHDLKVET
PQGKTLIDKLNLQFPLGTWLLIQGHSGVGKTTLLRTIAGLWPYASGTIQRPQQDTLFLSQKPYLPQGRLLDALFYPELAP
EDVNEQQVIDILAKVQLGHLSDKLEQENDWTRVLSLGEQQRLSFARILLHKPTVVFLDEATASMDEGLEDAMYRLLKDEL
PQITVISVGHRSTLIPHHSQQLHIQ

Sequences:

>Translated_585_residues
MDWSQELYDSFIWLLKSLSLTTLLFPLTVYILAKTTQWGRQFWLLAEDYFHPKHNLLPLFYFMIIVFFNLLSVRIDILVS
NWYNALYKSLQDMNETVFWQQMVVFAVIASSSITNALLTYYLSKRFLIHWRMWLNNRMLNKWTENQAYYKTQYVEAQLDN
PDQRIQQDVSSFVSTSLDFATGLISSIVSIIAFTIILWNLSGPMTIANIEIPHAMVFLVFIYVLFSSIVAFKIGRPLIQL
NFANERLNANYRYSLIRLKEYAESIAFYRGEKMEKRLLTTQFNQVIDNVWQVIYRTLKLSGFNLIITQISVVFPLVIQVT
RYFRQQITLGDLMQTSSAFGRVQSSLSFFRNSYDDFAAYRAVLNRLTGFHSAIKAANRPSKLVFTESRHDIGFHDLKVET
PQGKTLIDKLNLQFPLGTWLLIQGHSGVGKTTLLRTIAGLWPYASGTIQRPQQDTLFLSQKPYLPQGRLLDALFYPELAP
EDVNEQQVIDILAKVQLGHLSDKLEQENDWTRVLSLGEQQRLSFARILLHKPTVVFLDEATASMDEGLEDAMYRLLKDEL
PQITVISVGHRSTLIPHHSQQLHIQ
>Mature_585_residues
MDWSQELYDSFIWLLKSLSLTTLLFPLTVYILAKTTQWGRQFWLLAEDYFHPKHNLLPLFYFMIIVFFNLLSVRIDILVS
NWYNALYKSLQDMNETVFWQQMVVFAVIASSSITNALLTYYLSKRFLIHWRMWLNNRMLNKWTENQAYYKTQYVEAQLDN
PDQRIQQDVSSFVSTSLDFATGLISSIVSIIAFTIILWNLSGPMTIANIEIPHAMVFLVFIYVLFSSIVAFKIGRPLIQL
NFANERLNANYRYSLIRLKEYAESIAFYRGEKMEKRLLTTQFNQVIDNVWQVIYRTLKLSGFNLIITQISVVFPLVIQVT
RYFRQQITLGDLMQTSSAFGRVQSSLSFFRNSYDDFAAYRAVLNRLTGFHSAIKAANRPSKLVFTESRHDIGFHDLKVET
PQGKTLIDKLNLQFPLGTWLLIQGHSGVGKTTLLRTIAGLWPYASGTIQRPQQDTLFLSQKPYLPQGRLLDALFYPELAP
EDVNEQQVIDILAKVQLGHLSDKLEQENDWTRVLSLGEQQRLSFARILLHKPTVVFLDEATASMDEGLEDAMYRLLKDEL
PQITVISVGHRSTLIPHHSQQLHIQ

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4506341, Length=520, Percent_Identity=26.3461538461538, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI4826958, Length=558, Percent_Identity=25.9856630824373, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI9945308, Length=576, Percent_Identity=23.7847222222222, Blast_Score=148, Evalue=2e-35,
Organism=Homo sapiens, GI7262393, Length=584, Percent_Identity=24.3150684931507, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI42490749, Length=271, Percent_Identity=26.1992619926199, Blast_Score=70, Evalue=7e-12,
Organism=Homo sapiens, GI89111135, Length=199, Percent_Identity=30.6532663316583, Blast_Score=69, Evalue=2e-11,
Organism=Escherichia coli, GI1787772, Length=507, Percent_Identity=31.7554240631164, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI1786575, Length=315, Percent_Identity=22.8571428571429, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1786654, Length=192, Percent_Identity=30.2083333333333, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1789873, Length=200, Percent_Identity=27.5, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788165, Length=171, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17532409, Length=576, Percent_Identity=28.2986111111111, Blast_Score=201, Evalue=9e-52,
Organism=Caenorhabditis elegans, GI17532411, Length=576, Percent_Identity=26.3888888888889, Blast_Score=194, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI17564250, Length=541, Percent_Identity=28.2809611829945, Blast_Score=169, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI72000520, Length=518, Percent_Identity=27.2200772200772, Blast_Score=151, Evalue=9e-37,
Organism=Caenorhabditis elegans, GI72000518, Length=204, Percent_Identity=42.156862745098, Blast_Score=148, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI17542146, Length=570, Percent_Identity=22.9824561403509, Blast_Score=144, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17558960, Length=192, Percent_Identity=40.1041666666667, Blast_Score=125, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI71992285, Length=361, Percent_Identity=25.7617728531856, Blast_Score=87, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17565938, Length=257, Percent_Identity=25.2918287937743, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6325110, Length=623, Percent_Identity=22.9534510433387, Blast_Score=124, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6323217, Length=189, Percent_Identity=28.042328042328, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24643394, Length=535, Percent_Identity=25.0467289719626, Blast_Score=165, Evalue=8e-41,
Organism=Drosophila melanogaster, GI24638550, Length=550, Percent_Identity=23.6363636363636, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24638552, Length=550, Percent_Identity=23.6363636363636, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24638554, Length=550, Percent_Identity=23.6363636363636, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24638546, Length=550, Percent_Identity=23.6363636363636, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24638556, Length=550, Percent_Identity=23.6363636363636, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24638548, Length=550, Percent_Identity=23.6363636363636, Blast_Score=147, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24638558, Length=531, Percent_Identity=24.105461393597, Blast_Score=145, Evalue=7e-35,
Organism=Drosophila melanogaster, GI24653245, Length=208, Percent_Identity=27.4038461538462, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281363262, Length=208, Percent_Identity=27.4038461538462, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357907, Length=280, Percent_Identity=25, Blast_Score=67, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397593, Length=388, Percent_Identity=24.2268041237113, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 67820; Mature: 67820

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSQELYDSFIWLLKSLSLTTLLFPLTVYILAKTTQWGRQFWLLAEDYFHPKHNLLPLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEHHHCCCCCCHHHHH
YFMIIVFFNLLSVRIDILVSNWYNALYKSLQDMNETVFWQQMVVFAVIASSSITNALLTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLSKRFLIHWRMWLNNRMLNKWTENQAYYKTQYVEAQLDNPDQRIQQDVSSFVSTSLDFA
HHHHHHHHHHHHHHCCHHHHHHHCCCCCEEHEEEEEECCCHHHHHHHHHHHHHHHHHHHH
TGLISSIVSIIAFTIILWNLSGPMTIANIEIPHAMVFLVFIYVLFSSIVAFKIGRPLIQL
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
NFANERLNANYRYSLIRLKEYAESIAFYRGEKMEKRLLTTQFNQVIDNVWQVIYRTLKLS
EECCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFNLIITQISVVFPLVIQVTRYFRQQITLGDLMQTSSAFGRVQSSLSFFRNSYDDFAAYR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AVLNRLTGFHSAIKAANRPSKLVFTESRHDIGFHDLKVETPQGKTLIDKLNLQFPLGTWL
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEE
LIQGHSGVGKTTLLRTIAGLWPYASGTIQRPQQDTLFLSQKPYLPQGRLLDALFYPELAP
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCC
EDVNEQQVIDILAKVQLGHLSDKLEQENDWTRVLSLGEQQRLSFARILLHKPTVVFLDEA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECH
TASMDEGLEDAMYRLLKDELPQITVISVGHRSTLIPHHSQQLHIQ
HHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECC
>Mature Secondary Structure
MDWSQELYDSFIWLLKSLSLTTLLFPLTVYILAKTTQWGRQFWLLAEDYFHPKHNLLPLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEHHHCCCCCCHHHHH
YFMIIVFFNLLSVRIDILVSNWYNALYKSLQDMNETVFWQQMVVFAVIASSSITNALLTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLSKRFLIHWRMWLNNRMLNKWTENQAYYKTQYVEAQLDNPDQRIQQDVSSFVSTSLDFA
HHHHHHHHHHHHHHCCHHHHHHHCCCCCEEHEEEEEECCCHHHHHHHHHHHHHHHHHHHH
TGLISSIVSIIAFTIILWNLSGPMTIANIEIPHAMVFLVFIYVLFSSIVAFKIGRPLIQL
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
NFANERLNANYRYSLIRLKEYAESIAFYRGEKMEKRLLTTQFNQVIDNVWQVIYRTLKLS
EECCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFNLIITQISVVFPLVIQVTRYFRQQITLGDLMQTSSAFGRVQSSLSFFRNSYDDFAAYR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AVLNRLTGFHSAIKAANRPSKLVFTESRHDIGFHDLKVETPQGKTLIDKLNLQFPLGTWL
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEE
LIQGHSGVGKTTLLRTIAGLWPYASGTIQRPQQDTLFLSQKPYLPQGRLLDALFYPELAP
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCC
EDVNEQQVIDILAKVQLGHLSDKLEQENDWTRVLSLGEQQRLSFARILLHKPTVVFLDEA
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECH
TASMDEGLEDAMYRLLKDELPQITVISVGHRSTLIPHHSQQLHIQ
HHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]