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The map label for this gene is ihfB

Identifier: 15602665

GI number: 15602665

Start: 943563

End: 943847

Strand: Reverse

Name: ihfB

Synonym: PM0800

Alternate gene names: 15602665

Gene position: 943847-943563 (Counterclockwise)

Preceding gene: 15602666

Following gene: 15602664

Centisome position: 41.81

GC content: 38.6

Gene sequence:

>285_bases
ATGACTAAATCAGAGCTTATTGAGCGTTTAGTCCAAAAATGTCATGCAGTTGCGGCAAAAGATGTTGAAAATGCAGTAAA
AGAGATTTTGGATCAAATGTCATTCGCATTAGAAAGTGGTAAGCGTATTGAAGTAAGAGGATTTGGTAGTTTCTCATTGC
ATTATCGCCAACCTCGTTTAGGACGTAATCCTAAAACAGGTGAACAAGTGAAATTAGACGCAAAATCTGTCCCGCACTTT
AAAGCAGGCAAAGAGCTGAGAGAGCGTGTTGATATTTACGCATAA

Upstream 100 bases:

>100_bases
AAGCGTTCAAAGCAGCTAAAGGCGAATAATTAACTTCCCCTTATCGCATAGAGCTAACATGTGAGAACATGTTAGCTCAC
TATCAAGTTAGGAGAAAATT

Downstream 100 bases:

>100_bases
TTTCAACTAACTTTATATAACGACACGTTTAAGTGTCGTTTTTTGTATTTATTTTTGGCATAATGGAACATATTTTTTTG
TTAAGGAGTGAGTAGATGAT

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRLGRNPKTGEQVKLDAKSVPHF
KAGKELRERVDIYA

Sequences:

>Translated_94_residues
MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRLGRNPKTGEQVKLDAKSVPHF
KAGKELRERVDIYA
>Mature_93_residues
TKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRLGRNPKTGEQVKLDAKSVPHFK
AGKELRERVDIYA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=94, Percent_Identity=64.8936170212766, Blast_Score=131, Evalue=7e-33,
Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=36.2637362637363, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=32.967032967033, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_PASMU (Q9CML8)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245737.1
- ProteinModelPortal:   Q9CML8
- SMR:   Q9CML8
- GeneID:   1244147
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0800
- NMPDR:   fig|272843.1.peg.800
- HOGENOM:   HBG705085
- OMA:   DLINILV
- ProtClustDB:   PRK00199
- BioCyc:   PMUL272843:PM0800-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10682; Mature: 10551

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCC
GRNPKTGEQVKLDAKSVPHFKAGKELRERVDIYA
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
TKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCC
GRNPKTGEQVKLDAKSVPHFKAGKELRERVDIYA
CCCCCCCCEEEECCCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100