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The map label for this gene is ygdD [C]

Identifier: 15602635

GI number: 15602635

Start: 910072

End: 910455

Strand: Reverse

Name: ygdD [C]

Synonym: PM0770

Alternate gene names: 15602635

Gene position: 910455-910072 (Counterclockwise)

Preceding gene: 15602636

Following gene: 161723312

Centisome position: 40.33

GC content: 40.62

Gene sequence:

>384_bases
ATGAAAAATAAATGGTTATTTATTGCCGCACTGAGCGGCTTTTTCTGTATTGCATTCGGTGCATTTGCGGCGCATGGCTT
AGAAAAAACCTTGATGCCAAAAGCCCTTGCCTGGATTGAAACCGGCTTAAAATATCAATTCTTTCATACTGTCGCGTTGA
TGGTATTGGGTACCTTGCAGCTATATTTAAAAGCAGACATAGATCGAGTGATAAACTGGATTGCTTCAACCTGGAGTTTA
GGTATTGTCCTCTTTAGTGGCAGTTTGTATGCCTTAGCGTTAGGGGCAACAAAATCCGTTGCGTGGTTAACGCCAATTGG
TGGCACGTTATTTCTAATTGGTTGGGCGATGTTAGCTTATAGAAGTTATAAAAATAAGTCATGA

Upstream 100 bases:

>100_bases
TGTTGCTTTTGTTGGCGGTATTCCAGTTGGACCGTTAATCGCTGCGGGGATCTTATCTTTATTCTTAGGAAAATCTTAAA
ATTATTGTTAAGAGGACAAG

Downstream 100 bases:

>100_bases
TGAAAAAAAGCACTAAGAACAGCCCATTTAATACCTTGCAACAGGCACTTTTCACACAATTAAAAGATGTGATGAATGTG
GATTATCGCCAGTTGTTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKNKWLFIAALSGFFCIAFGAFAAHGLEKTLMPKALAWIETGLKYQFFHTVALMVLGTLQLYLKADIDRVINWIASTWSL
GIVLFSGSLYALALGATKSVAWLTPIGGTLFLIGWAMLAYRSYKNKS

Sequences:

>Translated_127_residues
MKNKWLFIAALSGFFCIAFGAFAAHGLEKTLMPKALAWIETGLKYQFFHTVALMVLGTLQLYLKADIDRVINWIASTWSL
GIVLFSGSLYALALGATKSVAWLTPIGGTLFLIGWAMLAYRSYKNKS
>Mature_127_residues
MKNKWLFIAALSGFFCIAFGAFAAHGLEKTLMPKALAWIETGLKYQFFHTVALMVLGTLQLYLKADIDRVINWIASTWSL
GIVLFSGSLYALALGATKSVAWLTPIGGTLFLIGWAMLAYRSYKNKS

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=127, Percent_Identity=42.5196850393701, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14044; Mature: 14044

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKWLFIAALSGFFCIAFGAFAAHGLEKTLMPKALAWIETGLKYQFFHTVALMVLGTLQ
CCCCEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LYLKADIDRVINWIASTWSLGIVLFSGSLYALALGATKSVAWLTPIGGTLFLIGWAMLAY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCEEEECCCCHHHHHHHHHHHHH
RSYKNKS
HHHCCCC
>Mature Secondary Structure
MKNKWLFIAALSGFFCIAFGAFAAHGLEKTLMPKALAWIETGLKYQFFHTVALMVLGTLQ
CCCCEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LYLKADIDRVINWIASTWSLGIVLFSGSLYALALGATKSVAWLTPIGGTLFLIGWAMLAY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCEEEECCCCHHHHHHHHHHHHH
RSYKNKS
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]