BacMap

Definition	Pasteurella multocida subsp. multocida str. Pm70, complete genome.
Accession	NC_002663
Length	2,257,487

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The map label for this gene is ydfG [C]

Identifier: 15602444

GI number: 15602444

Start: 667342

End: 668100

Strand: Reverse

Name: ydfG [C]

Synonym: PM0579

Alternate gene names: 15602444

Gene position: 668100-667342 (Counterclockwise)

Preceding gene: 15602445

Following gene: 15602443

Centisome position: 29.59

GC content: 45.19

Gene sequence:

>759_bases
ATGAAAAAAATTGCACTAGTGACTGGTGCCACCGCCGGATTTGGCACCGCGATTTGTCGTACATTAATTCAGCATAATTA
CAACGTGATTGGCACAGGGCGACGTGCTGAACGTTTAGCCGCATTACAGCAAGAATTTGGTGCCGATTTTTTGCCACTTG
CCTTTGATCTCTGCGATCGCCACGCCACAGAAAAAGCGATTAACAACCTGCCTCAAGCCTGGCAAGCAGTAGATCTTTTA
GTCAATAATGCGGGGTTAGCATTAGGGCTTGATCGTGCTGATAAAGCTGAATTAGATGACTGGATACAAATGATCAACAC
CAACATCACAGGATTAGTCACCGTCACTCGCCTACTGCTACCGCAAATGGTCAGTCGCAATCAAGGACATATTATTAATT
TAGGATCGATTGCAGGGACTTACCCATATCCGGGTGGCAATGTTTATGGCGCAAGCAAAGCCTTTATCAAACAATTTAGC
TTAAACTTACGTGCCGATCTCGCAGGCACCGCCATTCGTGTGACCAATATTGAACCGGGATTATGCGGAGGGACGGAGTT
TTCCAATGTGCGATTTAAAGGTGATGATCAACGCGCCGCAAAATTATATGAAGATGTGCAGTTTGTTACTCCTGAAGATA
TTGCCAATATTGTCTTGTGGGCAAATCAACAGCCTGAACACGTCAACATTAACCGCATTGAAGTGATGCCAACAGCGCAA
AGTAGCGCGCCACTCAATGTCGTCAAACAAACGAAATAA

Upstream 100 bases:

>100_bases
TTGAAACTTATCCTGGTGTAAAATCACACCAAAAAGTCGTTGCAGCTTTTGCTCAACTCCGCTAAGTTAAACAGTGTGAT
AACTTATACCTGAGGTAAAA

Downstream 100 bases:

>100_bases
TTCCTGCAATTCCTTTCATCATGCTAAGGTGCGAAGTCATTGGCACCTTTTTTCTCTTTTTTCACCACGTTTTCGTTATT
TTTCATAAAACACTTGCTTT

Product: NADP-dependent dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKKIALVTGATAGFGTAICRTLIQHNYNVIGTGRRAERLAALQQEFGADFLPLAFDLCDRHATEKAINNLPQAWQAVDLL
VNNAGLALGLDRADKAELDDWIQMINTNITGLVTVTRLLLPQMVSRNQGHIINLGSIAGTYPYPGGNVYGASKAFIKQFS
LNLRADLAGTAIRVTNIEPGLCGGTEFSNVRFKGDDQRAAKLYEDVQFVTPEDIANIVLWANQQPEHVNINRIEVMPTAQ
SSAPLNVVKQTK

Sequences:

>Translated_252_residues
MKKIALVTGATAGFGTAICRTLIQHNYNVIGTGRRAERLAALQQEFGADFLPLAFDLCDRHATEKAINNLPQAWQAVDLL
VNNAGLALGLDRADKAELDDWIQMINTNITGLVTVTRLLLPQMVSRNQGHIINLGSIAGTYPYPGGNVYGASKAFIKQFS
LNLRADLAGTAIRVTNIEPGLCGGTEFSNVRFKGDDQRAAKLYEDVQFVTPEDIANIVLWANQQPEHVNINRIEVMPTAQ
SSAPLNVVKQTK
>Mature_252_residues
MKKIALVTGATAGFGTAICRTLIQHNYNVIGTGRRAERLAALQQEFGADFLPLAFDLCDRHATEKAINNLPQAWQAVDLL
VNNAGLALGLDRADKAELDDWIQMINTNITGLVTVTRLLLPQMVSRNQGHIINLGSIAGTYPYPGGNVYGASKAFIKQFS
LNLRADLAGTAIRVTNIEPGLCGGTEFSNVRFKGDDQRAAKLYEDVQFVTPEDIANIVLWANQQPEHVNINRIEVMPTAQ
SSAPLNVVKQTK

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI20149619, Length=187, Percent_Identity=32.620320855615, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI7706318, Length=188, Percent_Identity=32.9787234042553, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI7705855, Length=194, Percent_Identity=29.3814432989691, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40254992, Length=182, Percent_Identity=29.6703296703297, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI40548397, Length=181, Percent_Identity=30.3867403314917, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI214010158, Length=181, Percent_Identity=30.3867403314917, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI214010156, Length=181, Percent_Identity=30.3867403314917, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI22758144, Length=181, Percent_Identity=30.3867403314917, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI32483357, Length=225, Percent_Identity=27.1111111111111, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI22507405, Length=181, Percent_Identity=29.2817679558011, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4557649, Length=191, Percent_Identity=31.413612565445, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI157739938, Length=186, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI150247226, Length=192, Percent_Identity=27.0833333333333, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI4504503, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI7657478, Length=219, Percent_Identity=26.4840182648402, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI5031737, Length=222, Percent_Identity=27.9279279279279, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19923817, Length=187, Percent_Identity=25.1336898395722, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=58.7044534412955, Blast_Score=301, Evalue=3e-83,
Organism=Escherichia coli, GI1787335, Length=223, Percent_Identity=31.8385650224215, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=34.7826086956522, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1786812, Length=243, Percent_Identity=26.7489711934156, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI2367175, Length=186, Percent_Identity=28.494623655914, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786701, Length=183, Percent_Identity=26.2295081967213, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790717, Length=179, Percent_Identity=27.3743016759777, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=27.3469387755102, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=188, Percent_Identity=31.9148936170213, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=184, Percent_Identity=28.804347826087, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=188, Percent_Identity=30.8510638297872, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=192, Percent_Identity=31.25, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994600, Length=185, Percent_Identity=28.6486486486486, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=28.099173553719, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=239, Percent_Identity=27.1966527196653, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=239, Percent_Identity=25.9414225941423, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=244, Percent_Identity=28.2786885245902, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=238, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=237, Percent_Identity=24.4725738396624, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560176, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=244, Percent_Identity=25.8196721311475, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=224, Percent_Identity=25.8928571428571, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=227, Percent_Identity=24.2290748898678, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=213, Percent_Identity=25.3521126760563, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=235, Percent_Identity=24.2553191489362, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=246, Percent_Identity=22.3577235772358, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=36.8, Blast_Score=162, Evalue=3e-41,
Organism=Saccharomyces cerevisiae, GI6322227, Length=189, Percent_Identity=29.1005291005291, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322226, Length=193, Percent_Identity=22.7979274611399, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI116007236, Length=251, Percent_Identity=29.4820717131474, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI281364494, Length=252, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21358495, Length=225, Percent_Identity=28.8888888888889, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24641232, Length=255, Percent_Identity=29.0196078431373, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24584748, Length=182, Percent_Identity=29.1208791208791, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI161076933, Length=182, Percent_Identity=29.1208791208791, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24663911, Length=254, Percent_Identity=27.9527559055118, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571387, Length=244, Percent_Identity=29.5081967213115, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI23397609, Length=180, Percent_Identity=28.3333333333333, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24641388, Length=254, Percent_Identity=27.1653543307087, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24648693, Length=254, Percent_Identity=27.5590551181102, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI21355889, Length=254, Percent_Identity=27.5590551181102, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI28571526, Length=212, Percent_Identity=27.3584905660377, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357041, Length=201, Percent_Identity=29.3532338308458, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007234, Length=252, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28574402, Length=182, Percent_Identity=29.6703296703297, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24584744, Length=182, Percent_Identity=29.6703296703297, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24640442, Length=201, Percent_Identity=29.3532338308458, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24643142, Length=177, Percent_Identity=31.0734463276836, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24644339, Length=183, Percent_Identity=27.3224043715847, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=31.1827956989247, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24580925, Length=206, Percent_Identity=27.1844660194175, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648944, Length=240, Percent_Identity=27.5, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=27.3255813953488, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24584752, Length=192, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=28.3333333333333, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007232, Length=187, Percent_Identity=30.4812834224599, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27456; Mature: 27456

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIALVTGATAGFGTAICRTLIQHNYNVIGTGRRAERLAALQQEFGADFLPLAFDLCDR
CCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHH
HATEKAINNLPQAWQAVDLLVNNAGLALGLDRADKAELDDWIQMINTNITGLVTVTRLLL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
PQMVSRNQGHIINLGSIAGTYPYPGGNVYGASKAFIKQFSLNLRADLAGTAIRVTNIEPG
HHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEECCCCC
LCGGTEFSNVRFKGDDQRAAKLYEDVQFVTPEDIANIVLWANQQPEHVNINRIEVMPTAQ
CCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCCCEECCEEEEEEECCC
SSAPLNVVKQTK
CCCCCCHHCCCC
>Mature Secondary Structure
MKKIALVTGATAGFGTAICRTLIQHNYNVIGTGRRAERLAALQQEFGADFLPLAFDLCDR
CCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHH
HATEKAINNLPQAWQAVDLLVNNAGLALGLDRADKAELDDWIQMINTNITGLVTVTRLLL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
PQMVSRNQGHIINLGSIAGTYPYPGGNVYGASKAFIKQFSLNLRADLAGTAIRVTNIEPG
HHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEECCCCC
LCGGTEFSNVRFKGDDQRAAKLYEDVQFVTPEDIANIVLWANQQPEHVNINRIEVMPTAQ
CCCCCCCCCEEECCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCCCEECCEEEEEEECCC
SSAPLNVVKQTK
CCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]