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The map label for this gene is glgB

Identifier: 15602406

GI number: 15602406

Start: 618444

End: 620636

Strand: Direct

Name: glgB

Synonym: PM0541

Alternate gene names: 15602406

Gene position: 618444-620636 (Clockwise)

Preceding gene: 15602405

Following gene: 15602407

Centisome position: 27.4

GC content: 43.5

Gene sequence:

>2193_bases
ATGGTTCAATTAGTTTCACCTTCCGTGATCAATCAATTTTTTGAAGGAACGCATGCAGACCCATTTTCTGTGTTAGGGAT
GCATGAAACAGAGAAAGGAATTGAAATTCGCGCATTATTGCCGGATGCGAGCCGTGTGGTTGTGATTGACAGGGAAACAC
ACAACGCCGTTTGCGAGTTAGAGCACGTCGATGAACGCGGTTTCTTTGCCGCGGTCATACCGAAAACAAGAACGTTTTTT
GCCTATCAGTTACAGGTTTTTTGGGGCGCTGAATCACAATTTATTGAAGATCCTTACCGTTTCCATCCGATGCTGGCGGA
TTTAGACAATTGGCTGTTGAGTGAAGGATCGCATTTACGTCCTTATGAAGTGCTTGGTGCGCATTTTATGGAATGTGATG
GCGTGTCCGGGGTGAACTTCCGTTTATGGGCACCGAATGCAAAACGTGTTTCGATTGTGGGCGATTTTAACTATTGGGAT
GGGCGTCGCCACCCAATGCGTTTTCATCAAAAGAGCGGTGTGTGGGAACTGTTTTTACCGAAAGCCTCATTGGGTCAACT
GTATAAATTTGAATTGATAGATTGTCATGGTCAGTTACGCTTAAAAGCGGATCCTTATGCCTTTAGTTCACAGTTGCGTC
CTGATACGGCCTCACAAATTAGCGCGTTACCCGAAATTGTGCCAATGACAGAACAACGTCGTAAAGCGAATCAATTTGAT
CAACCCATTTCGATTTATGAAGTCCATCTTGGTTCGTGGCGTCGCAATTTAGAAAATAATTTTTGGTTGGATTATGATCA
AATCGCCGATGAGCTCATTCCTTATGTGAAAGAGATGGGCTTTACTCACATTGAATTTTTACCAATTTCTGAATTTCCAT
TTGATGGTTCTTGGGGCTATCAACCCTTGGGGCTGTACTCGCCAACCAGTCGGTTTGGTACGGCAGAAGGCTTTAAGCGT
TTAATTGAAAAAGCACACCAAGCTGGGATCAATGTTATTTTAGACTGGGTACCCGGTCATTTCCCAAGTGATACTCACGG
CTTAGCGGCATTTGATGGCACTGCGCTTTATGAACATGCTGATCCGCGTGAAGGCTACCACCAAGATTGGAATACCTTAA
TTTATAACTATGGACGTAATGAAGTGCGTAACTTTTTATCCAGCAATGCACTTTATTGGCTAGAACGTTTTGGTTTAGAT
GGTATTCGGGTGGATGCCGTTGCTTCGATGATTTATCGTGATTATAGCCGTGCCGAAGGAGAGTGGATTCCAAACCAATA
CGGTGGACGTGAAAATTTAGAAGCCATTGAATTTTTAAAACACACTAACTGGAAAATTGATTCTGAAGTACAAGGCGCGA
TTTCGATTGCTGAAGAATCGACATCTTTTGCAGGCGTTACCAAGCCGTCCACAGAAGGGGGGCTAGGATTCCACTTTAAA
TGGAATATGGGCTGGATGAATGACACCTTGTCTTACATGCAAAAAGATCCTGTGTATCGTCAATATCACCACGATCAAAT
GACTTTTGGTATGGTGTATCAATACAGCGAAAATTTTGTGTTACCGCTATCCCACGATGAAGTGGTACACGGTAAATGTT
CTTTACTCGGTAAAATGCCGGGCGATGCGTGGCAAAAATTTGCTAACTTGCGCGCTTATTATGGTTATATGTGGGGCTAT
CCGGGTAAAAAATTGCTCTTTATGGGCAATGAATTTGCTCAAGGGCGCGAATGGAATTATCAAGAAAGCCTCGATTGGTT
TTTACTGGAAGAAGAACATGGTGGGCGATGGCATCAAGGCGTGCAATTGTTAGTGAAAGATCTCAATCATATTTATCAAC
AACATGCCTCGTTATTTGAACTCGACGGCTCGCCAGAAGGATTTGACTGGTTAGTGGTTGATGATCGTCAAAACTCGGTG
TTTGCCTTTGAACGCCGCAGTAAAGACGGAGAGCGAATTATTGTCGTGAGTAACTTCACGCCAGTACCACGTCATGATTA
TCGTTTTGGCGTCAATATGGCGGGTAACTATGTGGAAATCTTAAACACAGATTCGGCATTTTATCAGGGGTCGAATGTTG
GTAATTACGGTGAAGTAGGCAGTGAGGCGATTCCAAGCCATGCGCGAGCACAATCAATTTGTGTATCTATTCCGCCACTC
GCCACGATTTATTTGAAATATCAAGGGGAATAA

Upstream 100 bases:

>100_bases
GAACAAATGTTTAGTGATAAGCATATCACCGCGTTTTTAGGCGCGATTGATCAAGCTCGTCATGCATGAATTTAGTTAAA
GTCGAATTTGAGGATTTGTT

Downstream 100 bases:

>100_bases
CGGTGCGTGATAGGCTGTCCTATTCCATATATAAGCAGTCAAAATGTGTAGTCAAAGTGATAATGTTGTACAAATGAATA
CGATAAAAAGTGGGAAACCC

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE

Number of amino acids: Translated: 730; Mature: 730

Protein sequence:

>730_residues
MVQLVSPSVINQFFEGTHADPFSVLGMHETEKGIEIRALLPDASRVVVIDRETHNAVCELEHVDERGFFAAVIPKTRTFF
AYQLQVFWGAESQFIEDPYRFHPMLADLDNWLLSEGSHLRPYEVLGAHFMECDGVSGVNFRLWAPNAKRVSIVGDFNYWD
GRRHPMRFHQKSGVWELFLPKASLGQLYKFELIDCHGQLRLKADPYAFSSQLRPDTASQISALPEIVPMTEQRRKANQFD
QPISIYEVHLGSWRRNLENNFWLDYDQIADELIPYVKEMGFTHIEFLPISEFPFDGSWGYQPLGLYSPTSRFGTAEGFKR
LIEKAHQAGINVILDWVPGHFPSDTHGLAAFDGTALYEHADPREGYHQDWNTLIYNYGRNEVRNFLSSNALYWLERFGLD
GIRVDAVASMIYRDYSRAEGEWIPNQYGGRENLEAIEFLKHTNWKIDSEVQGAISIAEESTSFAGVTKPSTEGGLGFHFK
WNMGWMNDTLSYMQKDPVYRQYHHDQMTFGMVYQYSENFVLPLSHDEVVHGKCSLLGKMPGDAWQKFANLRAYYGYMWGY
PGKKLLFMGNEFAQGREWNYQESLDWFLLEEEHGGRWHQGVQLLVKDLNHIYQQHASLFELDGSPEGFDWLVVDDRQNSV
FAFERRSKDGERIIVVSNFTPVPRHDYRFGVNMAGNYVEILNTDSAFYQGSNVGNYGEVGSEAIPSHARAQSICVSIPPL
ATIYLKYQGE

Sequences:

>Translated_730_residues
MVQLVSPSVINQFFEGTHADPFSVLGMHETEKGIEIRALLPDASRVVVIDRETHNAVCELEHVDERGFFAAVIPKTRTFF
AYQLQVFWGAESQFIEDPYRFHPMLADLDNWLLSEGSHLRPYEVLGAHFMECDGVSGVNFRLWAPNAKRVSIVGDFNYWD
GRRHPMRFHQKSGVWELFLPKASLGQLYKFELIDCHGQLRLKADPYAFSSQLRPDTASQISALPEIVPMTEQRRKANQFD
QPISIYEVHLGSWRRNLENNFWLDYDQIADELIPYVKEMGFTHIEFLPISEFPFDGSWGYQPLGLYSPTSRFGTAEGFKR
LIEKAHQAGINVILDWVPGHFPSDTHGLAAFDGTALYEHADPREGYHQDWNTLIYNYGRNEVRNFLSSNALYWLERFGLD
GIRVDAVASMIYRDYSRAEGEWIPNQYGGRENLEAIEFLKHTNWKIDSEVQGAISIAEESTSFAGVTKPSTEGGLGFHFK
WNMGWMNDTLSYMQKDPVYRQYHHDQMTFGMVYQYSENFVLPLSHDEVVHGKCSLLGKMPGDAWQKFANLRAYYGYMWGY
PGKKLLFMGNEFAQGREWNYQESLDWFLLEEEHGGRWHQGVQLLVKDLNHIYQQHASLFELDGSPEGFDWLVVDDRQNSV
FAFERRSKDGERIIVVSNFTPVPRHDYRFGVNMAGNYVEILNTDSAFYQGSNVGNYGEVGSEAIPSHARAQSICVSIPPL
ATIYLKYQGE
>Mature_730_residues
MVQLVSPSVINQFFEGTHADPFSVLGMHETEKGIEIRALLPDASRVVVIDRETHNAVCELEHVDERGFFAAVIPKTRTFF
AYQLQVFWGAESQFIEDPYRFHPMLADLDNWLLSEGSHLRPYEVLGAHFMECDGVSGVNFRLWAPNAKRVSIVGDFNYWD
GRRHPMRFHQKSGVWELFLPKASLGQLYKFELIDCHGQLRLKADPYAFSSQLRPDTASQISALPEIVPMTEQRRKANQFD
QPISIYEVHLGSWRRNLENNFWLDYDQIADELIPYVKEMGFTHIEFLPISEFPFDGSWGYQPLGLYSPTSRFGTAEGFKR
LIEKAHQAGINVILDWVPGHFPSDTHGLAAFDGTALYEHADPREGYHQDWNTLIYNYGRNEVRNFLSSNALYWLERFGLD
GIRVDAVASMIYRDYSRAEGEWIPNQYGGRENLEAIEFLKHTNWKIDSEVQGAISIAEESTSFAGVTKPSTEGGLGFHFK
WNMGWMNDTLSYMQKDPVYRQYHHDQMTFGMVYQYSENFVLPLSHDEVVHGKCSLLGKMPGDAWQKFANLRAYYGYMWGY
PGKKLLFMGNEFAQGREWNYQESLDWFLLEEEHGGRWHQGVQLLVKDLNHIYQQHASLFELDGSPEGFDWLVVDDRQNSV
FAFERRSKDGERIIVVSNFTPVPRHDYRFGVNMAGNYVEILNTDSAFYQGSNVGNYGEVGSEAIPSHARAQSICVSIPPL
ATIYLKYQGE

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family

Homologues:

Organism=Homo sapiens, GI189458812, Length=660, Percent_Identity=26.969696969697, Blast_Score=175, Evalue=1e-43,
Organism=Escherichia coli, GI1789839, Length=730, Percent_Identity=66.1643835616438, Blast_Score=1039, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=623, Percent_Identity=25.6821829855538, Blast_Score=156, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI32564391, Length=488, Percent_Identity=26.2295081967213, Blast_Score=135, Evalue=6e-32,
Organism=Saccharomyces cerevisiae, GI6320826, Length=653, Percent_Identity=25.4211332312404, Blast_Score=150, Evalue=6e-37,
Organism=Drosophila melanogaster, GI28573410, Length=638, Percent_Identity=27.5862068965517, Blast_Score=176, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLGB_PASMU (Q9CN94)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245478.1
- ProteinModelPortal:   Q9CN94
- SMR:   Q9CN94
- GeneID:   1243888
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0541
- NMPDR:   fig|272843.1.peg.541
- HOGENOM:   HBG287139
- OMA:   DGTCLYE
- ProtClustDB:   PRK05402
- BioCyc:   PMUL272843:PM0541-MONOMER
- BRENDA:   2.4.1.18
- HAMAP:   MF_00685
- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- Gene3D:   G3DSA:2.60.40.1180
- Gene3D:   G3DSA:3.20.20.80
- Gene3D:   G3DSA:2.60.40.10
- TIGRFAMs:   TIGR01515

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48; SSF51445 Glyco_hydro_cat; SSF81296 Ig_E-set

EC number: =2.4.1.18

Molecular weight: Translated: 84010; Mature: 84010

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: ACT_SITE 300-300 ACT_SITE 335-335 ACT_SITE 340-340 ACT_SITE 403-403 ACT_SITE 405-405 ACT_SITE 458-458 ACT_SITE 525-525 ACT_SITE 526-526

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQLVSPSVINQFFEGTHADPFSVLGMHETEKGIEIRALLPDASRVVVIDRETHNAVCEL
CEEECCHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEE
EHVDERGFFAAVIPKTRTFFAYQLQVFWGAESQFIEDPYRFHPMLADLDNWLLSEGSHLR
EECCCCCCEEEECCCCCEEEEEEEEEEECCCHHHHCCCHHHCHHHHHHHHHHHCCCCCCC
PYEVLGAHFMECDGVSGVNFRLWAPNAKRVSIVGDFNYWDGRRHPMRFHQKSGVWELFLP
HHHHHCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEEEC
KASLGQLYKFELIDCHGQLRLKADPYAFSSQLRPDTASQISALPEIVPMTEQRRKANQFD
CCCCCCEEEEEEEECCCEEEEEECCCHHCCCCCCCCHHHHHHCHHHCCCCHHHHHHHHCC
QPISIYEVHLGSWRRNLENNFWLDYDQIADELIPYVKEMGFTHIEFLPISEFPFDGSWGY
CCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
QPLGLYSPTSRFGTAEGFKRLIEKAHQAGINVILDWVPGHFPSDTHGLAAFDGTALYEHA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEECCCEEECCC
DPREGYHQDWNTLIYNYGRNEVRNFLSSNALYWLERFGLDGIRVDAVASMIYRDYSRAEG
CCCCCCCCCCHHHEEECCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
EWIPNQYGGRENLEAIEFLKHTNWKIDSEVQGAISIAEESTSFAGVTKPSTEGGLGFHFK
CCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
WNMGWMNDTLSYMQKDPVYRQYHHDQMTFGMVYQYSENFVLPLSHDEVVHGKCSLLGKMP
EECCCHHHHHHHHHCCCCHHHHCCCCEEEEEEEEECCCEEEECCCCCEECCHHHEEECCC
GDAWQKFANLRAYYGYMWGYPGKKLLFMGNEFAQGREWNYQESLDWFLLEEEHGGRWHQG
CHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCHHHCCCEEEEECCCCCCHHHH
VQLLVKDLNHIYQQHASLFELDGSPEGFDWLVVDDRQNSVFAFERRSKDGERIIVVSNFT
HHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
PVPRHDYRFGVNMAGNYVEILNTDSAFYQGSNVGNYGEVGSEAIPSHARAQSICVSIPPL
CCCCCCEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCCCHHCCCHHHHHEEEEECCCE
ATIYLKYQGE
EEEEEEEECC
>Mature Secondary Structure
MVQLVSPSVINQFFEGTHADPFSVLGMHETEKGIEIRALLPDASRVVVIDRETHNAVCEL
CEEECCHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEE
EHVDERGFFAAVIPKTRTFFAYQLQVFWGAESQFIEDPYRFHPMLADLDNWLLSEGSHLR
EECCCCCCEEEECCCCCEEEEEEEEEEECCCHHHHCCCHHHCHHHHHHHHHHHCCCCCCC
PYEVLGAHFMECDGVSGVNFRLWAPNAKRVSIVGDFNYWDGRRHPMRFHQKSGVWELFLP
HHHHHCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHCCCCEEEEEC
KASLGQLYKFELIDCHGQLRLKADPYAFSSQLRPDTASQISALPEIVPMTEQRRKANQFD
CCCCCCEEEEEEEECCCEEEEEECCCHHCCCCCCCCHHHHHHCHHHCCCCHHHHHHHHCC
QPISIYEVHLGSWRRNLENNFWLDYDQIADELIPYVKEMGFTHIEFLPISEFPFDGSWGY
CCCEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
QPLGLYSPTSRFGTAEGFKRLIEKAHQAGINVILDWVPGHFPSDTHGLAAFDGTALYEHA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEECCCEEECCC
DPREGYHQDWNTLIYNYGRNEVRNFLSSNALYWLERFGLDGIRVDAVASMIYRDYSRAEG
CCCCCCCCCCHHHEEECCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
EWIPNQYGGRENLEAIEFLKHTNWKIDSEVQGAISIAEESTSFAGVTKPSTEGGLGFHFK
CCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
WNMGWMNDTLSYMQKDPVYRQYHHDQMTFGMVYQYSENFVLPLSHDEVVHGKCSLLGKMP
EECCCHHHHHHHHHCCCCHHHHCCCCEEEEEEEEECCCEEEECCCCCEECCHHHEEECCC
GDAWQKFANLRAYYGYMWGYPGKKLLFMGNEFAQGREWNYQESLDWFLLEEEHGGRWHQG
CHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCHHHCCCEEEEECCCCCCHHHH
VQLLVKDLNHIYQQHASLFELDGSPEGFDWLVVDDRQNSVFAFERRSKDGERIIVVSNFT
HHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
PVPRHDYRFGVNMAGNYVEILNTDSAFYQGSNVGNYGEVGSEAIPSHARAQSICVSIPPL
CCCCCCEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCCCHHCCCHHHHHEEEEECCCE
ATIYLKYQGE
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11248100