| Definition | Pasteurella multocida subsp. multocida str. Pm70, complete genome. |
|---|---|
| Accession | NC_002663 |
| Length | 2,257,487 |
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The map label for this gene is 15602338
Identifier: 15602338
GI number: 15602338
Start: 556298
End: 558928
Strand: Direct
Name: 15602338
Synonym: PM0473
Alternate gene names: NA
Gene position: 556298-558928 (Clockwise)
Preceding gene: 15602337
Following gene: 15602339
Centisome position: 24.64
GC content: 41.7
Gene sequence:
>2631_bases ATGACGAGGAGTTTTAGCGTGTCAACAAAAAATATCGATTATGATGATTTACAAGATATCGTCGCATCAAGTGACACAGG AGGTCGTGATCCTGACGGTTTCCCGAAAAAATTAATTGCTGGTGTCGCGATCTTATGGTCACTTTTTCAACTGTATTATG CTTCTCCTGCGCCATTTTGGTTGCAAGAGTTTTTGCGTAGTATTGGGGTCAATCTCAATGTCGTTTTCGATGATACAAAA GCCCGTTCGGTTCATCTTGCTTTTGCTTTATTTTTAGCTTATTTGTCTTACCCCGCCTTTAAATTTTCGCCGAAGCATCG TATTCCGTTAACAGATTGGATCTTTGCTACCGCGGGAGCGTTCTTAGGCTCGTACTACCTGTTCTTTTATGACGGCTTAG TGACACGTTTTGGCGCCCCAAACTTACAAGATATTATTGCGGGTTGCATTGGCATTGTCTTATTACTTGAAGCGACACGC CGTAGCCTTGGTTTACCTCTGGTGATTATTGCGAGTATTTTTTTAACGTATAACTATTTTGGGCAATATTTACCAACAGA TTGGATCATTAGTCATCGTACAGGTTCACTTTCTCATATTATTAATCAACAATGGATTACTACAGAAGGGGTGTTTGGTG TGGCATTAGGGGTGTCCACTAAATATGTGTTCCTGTTTGTTCTCTTTGGGGCGTTATTGGATAAAGCAGGTGCCGGAAAT TACTTCATTAAAAGTGCGTTTGCTTATTTAGGGCATTTGCGTGGAGGTCCAGCAAAAGCTGCGGTGGTGGCATCCGGTTT AACTGGCTTAATTTCAGGTTCTTCTATTGCCAATGTGGTTACAACAGGTACATTCACCATTCCTATGATGAAACGCGTCG GTTTTTCCGCGGAGAAAGCGGGTGCGGTAGAAGTGGCCTCTTCAGTTAATGGGCAAATTATGCCGCCTGTTATGGGAGCA GCCGCCTTTTTAATGATTGAGTATGTCAACATGCCATATAGCCAGTTGATTACGCATGCTTTTTTACCGGCGGTGATTTC ATATATTGCACTGGTTTATATTGTGCACCTTGAAGCCTGTAAGATGAATTTACAAGGGTTACCACGTACGGATGAACCAA AACCTTTTTTAAACACCTTACTTCGTGCATTAGGTACCTTTATTTTTCTTTGTGTGCTGTATTTTGCGGTTGAGTTTGGG CTAGGCTGGTTAAAAGTCGTCACACCACATTATGCATTCAGTATTGTGATTGCCTTACTGGCTGTCATTTATCTTTTATT ATTGCGCCGTGTCGCGACATTCCCAGATCTTGAAATTGATGATCCGCATTCACCTGTGGTGAAATTGCCGTCTGTTAGAC CAACGATTAATGCGGGCTTACATTTCTTATTACCTGTGATTATTTTGATCTGGTGTTTAATGGTAGAGCGCTTATCTCCG GGTTTATCGGCATTCTGGGGCGCCTTATTCCTTATTGTGATTTTATTAACACAACGCCCATTATTAGCCTATTTCAGAAA ACAGACTACTTTCCGTCGAGAGTTTAAACTCGGTTGGAACGATTTGGTGGATGGACTCGAAGCCGGTGCCAGAAATATGA TCGGAATCGGGATCGCTACTGCAACGGCAGGGATTATTGTTGGGGTAGTGTCACTAACTGGTTTTGGTGTGCAGCTTGCA ACGATTATTGAAACGCTTTCAATGGGTAACATTTTCTTAATGTTATTATTGGTCGCTGGTTTTAGTTTGATTCTGGGGAT GGGCTTGCCAACCACAGCAAACTACATTGTGGTGTCTTCTTTAATGGCAGTCGTGATTATTGAGGTTGGACGCCAAAATG GCTTCATTGTGCCGTTAATTGCGGTGCATTTGTTTGTGTTCTATTTTGGTATTATGGCAGATGTCACGCCGCCTGTTGGT TTAGCTTCCTTTGCTGCATCGGCAGTATCAGGGGGAGATCCGATTAAAACGGGATTAACGGCTTTCTCTTATAGTTTACG TACTGCTATTTTACCGTTCTTGTTTATTTTTAATACTGACTTACTGTTAATTGATGTGAGTTTCTCGAAAGGCATTCTCG TCTTTATTACAGCCACGATTGGTATTCTTGCCTTTACAGCAGGGGCTGTCGGCTATTTCTTCCGTCGTAATAAATTATGG GAAAGCCTCGCTTTGTTTGTATTAGCTTTTGCTTTATTCCGTCCTGGTTTCTTCATGGAACATATTTCACCAACACAGCG TTATTTTGAACCAGCACAATTAACGCAAGAAGTACAACAAGCTTCGGTGGGGGATAATTTGACAATTAAAGTGTCGGGCT TAAATCCTTACGGCAAGCAAATTGAATTCTATGCGCAATTGCCAATTGCAGAAGGACAAAGCGGTGAGGAACGTTTACAA AAAATGGGCTTGACCTTATTTGAACAAGAAAAACCAGAAGGCAAACAATTACTGATTGATGCTGTGGAGATTGATTCAAT TGCAGCAAAAGCAGGATTGAACTGGGATCAAGTGGTGTTAGAAGGTTCGGTACCTGTCAAAGATGCCCTTGCTAAAGAAT GGTTATTTATTCCAACATTACTGTTATTGTTCATGTTAGCAATTTATCAACGTCGTCGTCAGCCAGCGTAA
Upstream 100 bases:
>100_bases GCGGTGCGTTACTATAAAGAAAGAGGTTGGTTGTAATCTTTTTACCTCTCCATTTTTAAGGCAGGCAAGTTTCCTGCCTT TTTCCGTTTTTTATTTTTAG
Downstream 100 bases:
>100_bases GGAAAAACTATGTTTAAGAAAATTTTAATTACTGCGGATTTAGGTCATTTAGAAGATGCAGAAAAGGCGGTGAAAACCGC CCTAGAAATGACACAAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-Type Transporter Permease Component; TRAP-Type Transporter Fused Permease Components; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; Inner Membrane Protein; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; TRAP-Type Transporter; Permease; TRAP-Type Transport System Permease; TRAP Transport System Permease Component; TRAP Transporter Permease; TRAP Transporter 4TM/12TM Fusion Family; 4TM/12TM TRAP Transporter; TRAP-Type Transporter Fused Permeases; Integral Membrane Protein; Transcriptional Regulator DeoR Family; TRAP Transporter Large Permease; C4-Dicarboxylate Transporter; Trap Family Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component; TRAP Type Transporter Protein
Number of amino acids: Translated: 876; Mature: 875
Protein sequence:
>876_residues MTRSFSVSTKNIDYDDLQDIVASSDTGGRDPDGFPKKLIAGVAILWSLFQLYYASPAPFWLQEFLRSIGVNLNVVFDDTK ARSVHLAFALFLAYLSYPAFKFSPKHRIPLTDWIFATAGAFLGSYYLFFYDGLVTRFGAPNLQDIIAGCIGIVLLLEATR RSLGLPLVIIASIFLTYNYFGQYLPTDWIISHRTGSLSHIINQQWITTEGVFGVALGVSTKYVFLFVLFGALLDKAGAGN YFIKSAFAYLGHLRGGPAKAAVVASGLTGLISGSSIANVVTTGTFTIPMMKRVGFSAEKAGAVEVASSVNGQIMPPVMGA AAFLMIEYVNMPYSQLITHAFLPAVISYIALVYIVHLEACKMNLQGLPRTDEPKPFLNTLLRALGTFIFLCVLYFAVEFG LGWLKVVTPHYAFSIVIALLAVIYLLLLRRVATFPDLEIDDPHSPVVKLPSVRPTINAGLHFLLPVIILIWCLMVERLSP GLSAFWGALFLIVILLTQRPLLAYFRKQTTFRREFKLGWNDLVDGLEAGARNMIGIGIATATAGIIVGVVSLTGFGVQLA TIIETLSMGNIFLMLLLVAGFSLILGMGLPTTANYIVVSSLMAVVIIEVGRQNGFIVPLIAVHLFVFYFGIMADVTPPVG LASFAASAVSGGDPIKTGLTAFSYSLRTAILPFLFIFNTDLLLIDVSFSKGILVFITATIGILAFTAGAVGYFFRRNKLW ESLALFVLAFALFRPGFFMEHISPTQRYFEPAQLTQEVQQASVGDNLTIKVSGLNPYGKQIEFYAQLPIAEGQSGEERLQ KMGLTLFEQEKPEGKQLLIDAVEIDSIAAKAGLNWDQVVLEGSVPVKDALAKEWLFIPTLLLLFMLAIYQRRRQPA
Sequences:
>Translated_876_residues MTRSFSVSTKNIDYDDLQDIVASSDTGGRDPDGFPKKLIAGVAILWSLFQLYYASPAPFWLQEFLRSIGVNLNVVFDDTK ARSVHLAFALFLAYLSYPAFKFSPKHRIPLTDWIFATAGAFLGSYYLFFYDGLVTRFGAPNLQDIIAGCIGIVLLLEATR RSLGLPLVIIASIFLTYNYFGQYLPTDWIISHRTGSLSHIINQQWITTEGVFGVALGVSTKYVFLFVLFGALLDKAGAGN YFIKSAFAYLGHLRGGPAKAAVVASGLTGLISGSSIANVVTTGTFTIPMMKRVGFSAEKAGAVEVASSVNGQIMPPVMGA AAFLMIEYVNMPYSQLITHAFLPAVISYIALVYIVHLEACKMNLQGLPRTDEPKPFLNTLLRALGTFIFLCVLYFAVEFG LGWLKVVTPHYAFSIVIALLAVIYLLLLRRVATFPDLEIDDPHSPVVKLPSVRPTINAGLHFLLPVIILIWCLMVERLSP GLSAFWGALFLIVILLTQRPLLAYFRKQTTFRREFKLGWNDLVDGLEAGARNMIGIGIATATAGIIVGVVSLTGFGVQLA TIIETLSMGNIFLMLLLVAGFSLILGMGLPTTANYIVVSSLMAVVIIEVGRQNGFIVPLIAVHLFVFYFGIMADVTPPVG LASFAASAVSGGDPIKTGLTAFSYSLRTAILPFLFIFNTDLLLIDVSFSKGILVFITATIGILAFTAGAVGYFFRRNKLW ESLALFVLAFALFRPGFFMEHISPTQRYFEPAQLTQEVQQASVGDNLTIKVSGLNPYGKQIEFYAQLPIAEGQSGEERLQ KMGLTLFEQEKPEGKQLLIDAVEIDSIAAKAGLNWDQVVLEGSVPVKDALAKEWLFIPTLLLLFMLAIYQRRRQPA >Mature_875_residues TRSFSVSTKNIDYDDLQDIVASSDTGGRDPDGFPKKLIAGVAILWSLFQLYYASPAPFWLQEFLRSIGVNLNVVFDDTKA RSVHLAFALFLAYLSYPAFKFSPKHRIPLTDWIFATAGAFLGSYYLFFYDGLVTRFGAPNLQDIIAGCIGIVLLLEATRR SLGLPLVIIASIFLTYNYFGQYLPTDWIISHRTGSLSHIINQQWITTEGVFGVALGVSTKYVFLFVLFGALLDKAGAGNY FIKSAFAYLGHLRGGPAKAAVVASGLTGLISGSSIANVVTTGTFTIPMMKRVGFSAEKAGAVEVASSVNGQIMPPVMGAA AFLMIEYVNMPYSQLITHAFLPAVISYIALVYIVHLEACKMNLQGLPRTDEPKPFLNTLLRALGTFIFLCVLYFAVEFGL GWLKVVTPHYAFSIVIALLAVIYLLLLRRVATFPDLEIDDPHSPVVKLPSVRPTINAGLHFLLPVIILIWCLMVERLSPG LSAFWGALFLIVILLTQRPLLAYFRKQTTFRREFKLGWNDLVDGLEAGARNMIGIGIATATAGIIVGVVSLTGFGVQLAT IIETLSMGNIFLMLLLVAGFSLILGMGLPTTANYIVVSSLMAVVIIEVGRQNGFIVPLIAVHLFVFYFGIMADVTPPVGL ASFAASAVSGGDPIKTGLTAFSYSLRTAILPFLFIFNTDLLLIDVSFSKGILVFITATIGILAFTAGAVGYFFRRNKLWE SLALFVLAFALFRPGFFMEHISPTQRYFEPAQLTQEVQQASVGDNLTIKVSGLNPYGKQIEFYAQLPIAEGQSGEERLQK MGLTLFEQEKPEGKQLLIDAVEIDSIAAKAGLNWDQVVLEGSVPVKDALAKEWLFIPTLLLLFMLAIYQRRRQPA
Specific function: Unknown
COG id: COG4666
COG function: function code R; TRAP-type uncharacterized transport system, fused permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95912; Mature: 95781
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSFSVSTKNIDYDDLQDIVASSDTGGRDPDGFPKKLIAGVAILWSLFQLYYASPAPFW CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH LQEFLRSIGVNLNVVFDDTKARSVHLAFALFLAYLSYPAFKFSPKHRIPLTDWIFATAGA HHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHH FLGSYYLFFYDGLVTRFGAPNLQDIIAGCIGIVLLLEATRRSLGLPLVIIASIFLTYNYF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH GQYLPTDWIISHRTGSLSHIINQQWITTEGVFGVALGVSTKYVFLFVLFGALLDKAGAGN HHHCCCCCEEECCCCCHHHHHCCCCEEECCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCC YFIKSAFAYLGHLRGGPAKAAVVASGLTGLISGSSIANVVTTGTFTIPMMKRVGFSAEKA HHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHCCCHHHHHHCCCCCHHHHHHHCCCCCCCC GAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITHAFLPAVISYIALVYIVHLEAC CHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMNLQGLPRTDEPKPFLNTLLRALGTFIFLCVLYFAVEFGLGWLKVVTPHYAFSIVIALL HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AVIYLLLLRRVATFPDLEIDDPHSPVVKLPSVRPTINAGLHFLLPVIILIWCLMVERLSP HHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC GLSAFWGALFLIVILLTQRPLLAYFRKQTTFRREFKLGWNDLVDGLEAGARNMIGIGIAT CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH ATAGIIVGVVSLTGFGVQLATIIETLSMGNIFLMLLLVAGFSLILGMGLPTTANYIVVSS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LMAVVIIEVGRQNGFIVPLIAVHLFVFYFGIMADVTPPVGLASFAASAVSGGDPIKTGLT HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHH AFSYSLRTAILPFLFIFNTDLLLIDVSFSKGILVFITATIGILAFTAGAVGYFFRRNKLW HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESLALFVLAFALFRPGFFMEHISPTQRYFEPAQLTQEVQQASVGDNLTIKVSGLNPYGKQ HHHHHHHHHHHHHCCCHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC IEFYAQLPIAEGQSGEERLQKMGLTLFEQEKPEGKQLLIDAVEIDSIAAKAGLNWDQVVL EEEEEECCCCCCCCHHHHHHHHCCHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCHHHEEE EGSVPVKDALAKEWLFIPTLLLLFMLAIYQRRRQPA ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TRSFSVSTKNIDYDDLQDIVASSDTGGRDPDGFPKKLIAGVAILWSLFQLYYASPAPFW CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH LQEFLRSIGVNLNVVFDDTKARSVHLAFALFLAYLSYPAFKFSPKHRIPLTDWIFATAGA HHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHH FLGSYYLFFYDGLVTRFGAPNLQDIIAGCIGIVLLLEATRRSLGLPLVIIASIFLTYNYF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH GQYLPTDWIISHRTGSLSHIINQQWITTEGVFGVALGVSTKYVFLFVLFGALLDKAGAGN HHHCCCCCEEECCCCCHHHHHCCCCEEECCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCC YFIKSAFAYLGHLRGGPAKAAVVASGLTGLISGSSIANVVTTGTFTIPMMKRVGFSAEKA HHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHCCCHHHHHHCCCCCHHHHHHHCCCCCCCC GAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITHAFLPAVISYIALVYIVHLEAC CHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMNLQGLPRTDEPKPFLNTLLRALGTFIFLCVLYFAVEFGLGWLKVVTPHYAFSIVIALL HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH AVIYLLLLRRVATFPDLEIDDPHSPVVKLPSVRPTINAGLHFLLPVIILIWCLMVERLSP HHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC GLSAFWGALFLIVILLTQRPLLAYFRKQTTFRREFKLGWNDLVDGLEAGARNMIGIGIAT CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH ATAGIIVGVVSLTGFGVQLATIIETLSMGNIFLMLLLVAGFSLILGMGLPTTANYIVVSS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LMAVVIIEVGRQNGFIVPLIAVHLFVFYFGIMADVTPPVGLASFAASAVSGGDPIKTGLT HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHH AFSYSLRTAILPFLFIFNTDLLLIDVSFSKGILVFITATIGILAFTAGAVGYFFRRNKLW HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESLALFVLAFALFRPGFFMEHISPTQRYFEPAQLTQEVQQASVGDNLTIKVSGLNPYGKQ HHHHHHHHHHHHHCCCHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC IEFYAQLPIAEGQSGEERLQKMGLTLFEQEKPEGKQLLIDAVEIDSIAAKAGLNWDQVVL EEEEEECCCCCCCCHHHHHHHHCCHHHHCCCCCCCEEEEEHHHHHHHHHHCCCCHHHEEE EGSVPVKDALAKEWLFIPTLLLLFMLAIYQRRRQPA ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA