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The map label for this gene is rnfB

Identifier: 15602251

GI number: 15602251

Start: 455610

End: 456206

Strand: Reverse

Name: rnfB

Synonym: PM0386

Alternate gene names: 15602251

Gene position: 456206-455610 (Counterclockwise)

Preceding gene: 15602252

Following gene: 15602250

Centisome position: 20.21

GC content: 40.54

Gene sequence:

>597_bases
ATGATAATAACAACGGTCTATTTTATCCTCGTCGCTATCGCTGTATTAGCGTTGATATTTGGTGCAATCTTAGGCTTTGC
TTCCGTTAAACTGAAAGTAGAAGCCGATCCAATTGTGGAAAAAATCGATGCTTTATTACCACAAAGCCAATGTGGTCAAT
GTGGTTATCCCGGTTGTAAACCCTATGCTGAAGCCATTGCTAATGGTGACGATATCACTAAGTGTATTCCTGGGGGGCAA
ACCGTAATCGTCAATATTGCCGAATTAATGGGAGTTGAGCCACCCACAACGGATATTGAGGGTGATCCAGCACCTATGGT
TGCCTTTATTGATGAAGACATGTGTATAGGTTGCACAAAATGCATTCAAGCCTGTCCTGTCGATGCCATTATTGGCACAA
ATAAAGCCATGCATACCATTATTCCGGATCTTTGTACGGGCTGTGAACTTTGTGTGCCTCCTTGTCCAACAGATTGTATT
TCCATGATTAAGGTAGAAAGTACAATTCATAACTGGAATTGGAAATTCGATCCTAAACTGGTTATTCCCATTGTTGATAC
CACAACAACACAGAAAAAATTAATCAAAGGGGAATAA

Upstream 100 bases:

>100_bases
CCGCGGCAGACGTGCCTCATGTTTTTAAAGGTGCCTCGATTGCCTTAATCACAGCAGGGTTAATGTCACTTGCCTTTATG
GGCTTTACAGGATTGGTGAG

Downstream 100 bases:

>100_bases
AAAAATGGATGTTTTAACGCGTTTTAATTCAGGTAAATTGTGGGATTTTAAAGGTGGTGTCCATCCACCTGAACGGAAAT
CGCAGTCAAACCAAAAACCG

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MIITTVYFILVAIAVLALIFGAILGFASVKLKVEADPIVEKIDALLPQSQCGQCGYPGCKPYAEAIANGDDITKCIPGGQ
TVIVNIAELMGVEPPTTDIEGDPAPMVAFIDEDMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCI
SMIKVESTIHNWNWKFDPKLVIPIVDTTTTQKKLIKGE

Sequences:

>Translated_198_residues
MIITTVYFILVAIAVLALIFGAILGFASVKLKVEADPIVEKIDALLPQSQCGQCGYPGCKPYAEAIANGDDITKCIPGGQ
TVIVNIAELMGVEPPTTDIEGDPAPMVAFIDEDMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCI
SMIKVESTIHNWNWKFDPKLVIPIVDTTTTQKKLIKGE
>Mature_198_residues
MIITTVYFILVAIAVLALIFGAILGFASVKLKVEADPIVEKIDALLPQSQCGQCGYPGCKPYAEAIANGDDITKCIPGGQ
TVIVNIAELMGVEPPTTDIEGDPAPMVAFIDEDMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCI
SMIKVESTIHNWNWKFDPKLVIPIVDTTTTQKKLIKGE

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=188, Percent_Identity=57.9787234042553, Blast_Score=226, Evalue=6e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_PASMU (Q9CNP1)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245323.1
- ProteinModelPortal:   Q9CNP1
- SMR:   Q9CNP1
- GeneID:   1243733
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0386
- NMPDR:   fig|272843.1.peg.386
- HOGENOM:   HBG549899
- OMA:   ITKCVPG
- ProtClustDB:   PRK05113
- BioCyc:   PMUL272843:PM0386-MONOMER
- GO:   GO:0005737
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 21167; Mature: 21167

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
6.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIITTVYFILVAIAVLALIFGAILGFASVKLKVEADPIVEKIDALLPQSQCGQCGYPGCK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHCCCCCCCCCC
PYAEAIANGDDITKCIPGGQTVIVNIAELMGVEPPTTDIEGDPAPMVAFIDEDMCIGCTK
HHHHHHCCCCCHHHHCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
CIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCISMIKVESTIHNWNWKFDPKL
HHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCEE
VIPIVDTTTTQKKLIKGE
EEEEECCCCHHHHHCCCC
>Mature Secondary Structure
MIITTVYFILVAIAVLALIFGAILGFASVKLKVEADPIVEKIDALLPQSQCGQCGYPGCK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHCCCCCCCCCC
PYAEAIANGDDITKCIPGGQTVIVNIAELMGVEPPTTDIEGDPAPMVAFIDEDMCIGCTK
HHHHHHCCCCCHHHHCCCCCEEEEEHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
CIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCISMIKVESTIHNWNWKFDPKL
HHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCEE
VIPIVDTTTTQKKLIKGE
EEEEECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100