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The map label for this gene is rarA [H]

Identifier: 15602122

GI number: 15602122

Start: 288699

End: 290036

Strand: Direct

Name: rarA [H]

Synonym: PM0257

Alternate gene names: 15602122

Gene position: 288699-290036 (Clockwise)

Preceding gene: 15602121

Following gene: 15602123

Centisome position: 12.79

GC content: 43.8

Gene sequence:

>1338_bases
ATGTCGAATTTAAGTTTTGACTTTGCCCAACAGGCTTTTCAACCTTTAGCCGCCAGAATGCGTCCGACGACATTCGCTCA
ATATTGTGGGCAGTCGCATTTAATCGGTGAGGGAAAACCTTTACGTAAAGCACTTGATGCGGGTCATGTGCATTCCATGA
TCTTATGGGGACCGCCAGGTACGGGCAAAACGACTTTAGCAGAGATTATTGCACATCAGATTCATGCTGACGTTGAACGT
ATTTCTGCCGTTACCAGTGGTATTAAAGAAATTCGTGAGGCGATTGAACGAGCAAAAGAAAATCGTTTAGCTGAACGACG
TACGATCCTGTTTGTTGATGAAGTTCATCGTTTCAATAAAAGTCAACAAGATGCCTTTCTGCCTCATATTGAAGATGGCA
CCATTATCTTTATTGGGGCGACAACTGAAAATCCTTCCTTCGAATTAAATAATGCCTTACTTTCGCGAGCCAAAGTATAT
ATTCTAAAATCGTTGAGCACACAAGAAATCACCGAGGTGTTAAAGCAAGCACTGTTAGATGAAGAACGCGGGCTAGGCAA
AGTGCGGTTTGTTTTAGAAGAGAATGTATTAGAATGTTTAGCTGAATATGTGAACGGTGATGCACGCTTAGCCTTAAATA
GTCTTGAGCTGATGGCGGATATGGCAGAGGAAACGGAAGCAGGGAAAGCTTTGACACTCAGCTTATTAAAAAACGTGTTA
GGTGAACGTCAAGCGCGTTTTGATAAACAAGGTGATCGGTTTTATGATGCAATTTCTGCGCTACATAAATCAGTACGAGG
ATCTGCACCGGATGCCGCATTATATTGGTATGCTCGGATTTTGGCAGCGGGGGGGGATCCGCTTTATGTGGCACGACGTT
TACTCGCGATTGCTTCTGAAGATGTGGGTAATGCGGATCCGCGCGCGATGCAAGTGGCACTTGCTGCTTGGGATTGCTTT
ACTCGAGTCGGTGCGGCGGAAGGGGAGCGTGCGATTGCACAAGCGATTGTTTATCTGGCGGTTGCACCGAAAAGCAACGC
AGTTTATCGTGCATTTAATCAAGCGAAACAACACGTTAAAGAAACGCCAGATTATGAAGTACCAGCACATTTACGCAATG
CGCCTACCCATTTAATGAAAACATTGGGCTATGGTGAAGCATACCGTTATGCGCATGATGAAGAACATGCTTATGCTGCG
GGCGAAAATTATTTCCCAGAAGCATTGAAAGACACACAATATTATTTTCCAACTCATCGTGGGATGGAAATTAAAATCAA
AGAAAAGCTCGATTGGCTTAGACAACAGGATCAACAAAGCAAGAAAAAACGTTATTGA

Upstream 100 bases:

>100_bases
GTAATATTACCAACCAACCTTTAGCCGATGGTATATTCAAGTTTAGTGTGCCTAAAGGGGTAGAACTCGATGACCAACGC
CAAAAATAGTTAGAACAGTG

Downstream 100 bases:

>100_bases
AAACTGCCGTATGGCGAGTTTAATACTGCTCGAAACATTAACTAAAGCACCTGTTTTCAGGTGCTTTTTGTTAGCTGACT
GGTGAGGGTGCTGATATTCG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MSNLSFDFAQQAFQPLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAHQIHADVER
ISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKVY
ILKSLSTQEITEVLKQALLDEERGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVL
GERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYRAFNQAKQHVKETPDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAA
GENYFPEALKDTQYYFPTHRGMEIKIKEKLDWLRQQDQQSKKKRY

Sequences:

>Translated_445_residues
MSNLSFDFAQQAFQPLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAHQIHADVER
ISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKVY
ILKSLSTQEITEVLKQALLDEERGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVL
GERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYRAFNQAKQHVKETPDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAA
GENYFPEALKDTQYYFPTHRGMEIKIKEKLDWLRQQDQQSKKKRY
>Mature_444_residues
SNLSFDFAQQAFQPLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPGTGKTTLAEIIAHQIHADVERI
SAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKVYI
LKSLSTQEITEVLKQALLDEERGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVLG
ERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFT
RVGAAEGERAIAQAIVYLAVAPKSNAVYRAFNQAKQHVKETPDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAG
ENYFPEALKDTQYYFPTHRGMEIKIKEKLDWLRQQDQQSKKKRY

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=42.2374429223744, Blast_Score=327, Evalue=2e-89,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=37.8995433789954, Blast_Score=270, Evalue=2e-72,
Organism=Escherichia coli, GI1787119, Length=446, Percent_Identity=73.9910313901345, Blast_Score=680, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=40.5660377358491, Blast_Score=307, Evalue=2e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49861; Mature: 49730

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLSFDFAQQAFQPLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPG
CCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCC
TGKTTLAEIIAHQIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCC
SQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLD
CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EERGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVL
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPLYVARRLLAIASE
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
DVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAVYRAFNQAKQHVK
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ETPDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFPEALKDTQYYFPTHR
CCCCCCCCHHHHCCHHHHHHHHCCCHHHHCCCCCCCHHHCCCCCCHHHHHCCCEECCCCC
GMEIKIKEKLDWLRQQDQQSKKKRY
CCEEEHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNLSFDFAQQAFQPLAARMRPTTFAQYCGQSHLIGEGKPLRKALDAGHVHSMILWGPPG
CCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCC
TGKTTLAEIIAHQIHADVERISAVTSGIKEIREAIERAKENRLAERRTILFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCC
SQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKVYILKSLSTQEITEVLKQALLD
CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
EERGLGKVRFVLEENVLECLAEYVNGDARLALNSLELMADMAEETEAGKALTLSLLKNVL
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GERQARFDKQGDRFYDAISALHKSVRGSAPDAALYWYARILAAGGDPLYVARRLLAIASE
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
DVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYLAVAPKSNAVYRAFNQAKQHVK
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ETPDYEVPAHLRNAPTHLMKTLGYGEAYRYAHDEEHAYAAGENYFPEALKDTQYYFPTHR
CCCCCCCCHHHHCCHHHHHHHHCCCHHHHCCCCCCCHHHCCCCCCHHHHHCCCEECCCCC
GMEIKIKEKLDWLRQQDQQSKKKRY
CCEEEHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]