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The map label for this gene is rdgC

Identifier: 15601961

GI number: 15601961

Start: 121255

End: 122163

Strand: Direct

Name: rdgC

Synonym: PM0096

Alternate gene names: 15601961

Gene position: 121255-122163 (Clockwise)

Preceding gene: 15601957

Following gene: 15601962

Centisome position: 5.37

GC content: 38.28

Gene sequence:

>909_bases
ATGGTTTGGTTTAAAAACCTCATGATTTATCGTCTCACAAAAGCATTGGATTGGACGGCAGATAGCCTACAAACTGCATT
ACAACAATGTGAGTATCATCCTTGTCAACAATCAGACATGAGTAAATTTGGGTGGACAAATCCCCTGCGTGGCACTGAGA
TGTTACATTTTTCGGTGGGAAAACAGATTTTATTATTGGCACATAAAGAAGAAAAGATCTTGCCTGCCCACGTCGTAAAA
GCAGAATTGGAGCAACGTATTGAACTGCTTGAGCAAAAAGAAAATCGCAAGTTAAAGAAAGTCGAAAAGCAAGCATTAAA
AGATGATGTAGTATCGATGTTGTTACCTCGTGCTTTTAGCAAAAATCAACAAACAGCATTATGGATTGATACTGAAAATC
AGCTCATTTATGTGGATGCTGCCTCATCTAAACGGGCGGAAGATGCTTTGGCGTTATTGCGAAAGTCTTTAGGATCTTTG
CCAGTGGTGCCATTAAGTTTTGCTAACGAACCGAGCGTTATCATGACTGATTGGATTAATAAAGATCAGACACCTGCTTG
GTTGATGCCATTGGAAGAGGCAGAATTAACCGGCAGTCAAGACAGTGGCATTATCCGTTGCAAGCAACAAAATTTAGAAT
CGGATGAAATTCAAACCTTACTCAATGCTGGAAAGTTTATTACGAAGTTATCTTTAGCATGGGAAGAACGTTTGTCTTTT
ATTCTCAATGAAGATTGCACGTTAAAACGCTTGAAATTTGCGGATCAACTGCGTGAAAAAAATGACGATATTTTAAAAGA
AGATTATGCGCAACGTTTTGATGCAGATTTTGTGCTAATGACAGGCGTATTAACTCAATTAACAGCAAATTTATTAGAGG
AATTTGGTGGAGAAAAAGCGCGTTTATAG

Upstream 100 bases:

>100_bases
CTTGCATATTTTTCTCTCGAACTACGTTACAATACTGAATTATTTTGTCGCAAATACGACATAAGTTGCTTATTCTACCT
TAAAAAAGAAGGAACAAACT

Downstream 100 bases:

>100_bases
CATGATGCTTCTTGCGGCAAACGCCTTGTTTGATGATCAAAATTAGGCTGGTAGAGAATGTTTTTTGTGCTAATTTAGCG
CTGATGATGCGTTGCATCAG

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MVWFKNLMIYRLTKALDWTADSLQTALQQCEYHPCQQSDMSKFGWTNPLRGTEMLHFSVGKQILLLAHKEEKILPAHVVK
AELEQRIELLEQKENRKLKKVEKQALKDDVVSMLLPRAFSKNQQTALWIDTENQLIYVDAASSKRAEDALALLRKSLGSL
PVVPLSFANEPSVIMTDWINKDQTPAWLMPLEEAELTGSQDSGIIRCKQQNLESDEIQTLLNAGKFITKLSLAWEERLSF
ILNEDCTLKRLKFADQLREKNDDILKEDYAQRFDADFVLMTGVLTQLTANLLEEFGGEKARL

Sequences:

>Translated_302_residues
MVWFKNLMIYRLTKALDWTADSLQTALQQCEYHPCQQSDMSKFGWTNPLRGTEMLHFSVGKQILLLAHKEEKILPAHVVK
AELEQRIELLEQKENRKLKKVEKQALKDDVVSMLLPRAFSKNQQTALWIDTENQLIYVDAASSKRAEDALALLRKSLGSL
PVVPLSFANEPSVIMTDWINKDQTPAWLMPLEEAELTGSQDSGIIRCKQQNLESDEIQTLLNAGKFITKLSLAWEERLSF
ILNEDCTLKRLKFADQLREKNDDILKEDYAQRFDADFVLMTGVLTQLTANLLEEFGGEKARL
>Mature_302_residues
MVWFKNLMIYRLTKALDWTADSLQTALQQCEYHPCQQSDMSKFGWTNPLRGTEMLHFSVGKQILLLAHKEEKILPAHVVK
AELEQRIELLEQKENRKLKKVEKQALKDDVVSMLLPRAFSKNQQTALWIDTENQLIYVDAASSKRAEDALALLRKSLGSL
PVVPLSFANEPSVIMTDWINKDQTPAWLMPLEEAELTGSQDSGIIRCKQQNLESDEIQTLLNAGKFITKLSLAWEERLSF
ILNEDCTLKRLKFADQLREKNDDILKEDYAQRFDADFVLMTGVLTQLTANLLEEFGGEKARL

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=304, Percent_Identity=50.9868421052632, Blast_Score=308, Evalue=2e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_PASMU (P57810)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245033.1
- ProteinModelPortal:   P57810
- SMR:   P57810
- GeneID:   1243443
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0096
- NMPDR:   fig|272843.1.peg.96
- HOGENOM:   HBG537402
- OMA:   EIANHIE
- ProtClustDB:   PRK00321
- BioCyc:   PMUL272843:PM0096-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34641; Mature: 34641

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWFKNLMIYRLTKALDWTADSLQTALQQCEYHPCQQSDMSKFGWTNPLRGTEMLHFSVG
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEHHCC
KQILLLAHKEEKILPAHVVKAELEQRIELLEQKENRKLKKVEKQALKDDVVSMLLPRAFS
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNQQTALWIDTENQLIYVDAASSKRAEDALALLRKSLGSLPVVPLSFANEPSVIMTDWIN
CCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCC
KDQTPAWLMPLEEAELTGSQDSGIIRCKQQNLESDEIQTLLNAGKFITKLSLAWEERLSF
CCCCCCEECCCHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILNEDCTLKRLKFADQLREKNDDILKEDYAQRFDADFVLMTGVLTQLTANLLEEFGGEKA
HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
RL
CC
>Mature Secondary Structure
MVWFKNLMIYRLTKALDWTADSLQTALQQCEYHPCQQSDMSKFGWTNPLRGTEMLHFSVG
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEHHCC
KQILLLAHKEEKILPAHVVKAELEQRIELLEQKENRKLKKVEKQALKDDVVSMLLPRAFS
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNQQTALWIDTENQLIYVDAASSKRAEDALALLRKSLGSLPVVPLSFANEPSVIMTDWIN
CCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECCC
KDQTPAWLMPLEEAELTGSQDSGIIRCKQQNLESDEIQTLLNAGKFITKLSLAWEERLSF
CCCCCCEECCCHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILNEDCTLKRLKFADQLREKNDDILKEDYAQRFDADFVLMTGVLTQLTANLLEEFGGEKA
HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
RL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100