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The map label for this gene is lspB_1 [H]

Identifier: 15601921

GI number: 15601921

Start: 62686

End: 64137

Strand: Direct

Name: lspB_1 [H]

Synonym: PM0056

Alternate gene names: 15601921

Gene position: 62686-64137 (Clockwise)

Preceding gene: 15601920

Following gene: 15601922

Centisome position: 2.78

GC content: 39.39

Gene sequence:

>1452_bases
ATTGATTTAGGTGGAAAGGGAGGCGCTTTAAATTTCGATGAAGTGAGTCAGCGCTATCTCAATAAACCCCTGTCAACCAA
AGTCGTTTTTCAACTTGTCAAAGATCTTACTGATTTGCTGTATCGTTCCGGCTATGTGACCAGTGCCATAGGTTTAAAAA
ATCCGAAGATCAAGAATGGTGATCTCGAATTTGTGGTTTTGTGGGGAACAGTTAACGATATTCTCGTGGCGGGTGAGAAA
GCGACGCATTTTAGAGATAAAGCCATGTTAGCTGTGTTGCCAAATCTGAAAAACAAATTACTCAATGTTTATGATATTGA
TCAGATGGTAGAAATTTTGAACACGACTAACAAAAGTGCCAAAGTCAGTGTCGTAGCAAGTCAGGAAAAAGGCGCATCTA
ATCTTAATATTGAACGAGTCCGAAACGATTGGCCTGAGGTAACCTTGAGTATCAATAATTCAGGGACAGAAAATAATGCC
AATGGACGTAATCAAGCCAGTCTCAATGTTGCGTGGAGTGACTTACTCGGCACCAATGATCGATGGTCTTTTTCGACAGG
TTACCGTTTTTATAAGCACAGTAAAGCAAACCAGCAACGTAATTATGCGTTGTCTTATGTTCAACCTCTGTCTTTCTCGA
CTTTAGAACTGAAGTTAGCTGAATCGGAATATAAGAAAAGCCTTCAAGGGGAGAATGACGTTTACACCTCTTCGGGAAAA
ACACAGACAGCAACACTGAAGTTATCCCACGTTTTATTGCGTAATAAAGAGACAATTTTGTCTGTGTACGGTGAATTAGA
ATTTAAAAAACGCTTGAGTTATTTCTCAGATATTGAGATAGGTGACTATCACAATAATAAGCTGAATATTGGCTTGTCTT
ATGTGACGAATTTAGGCTATGGCAAGCTCTACAGTGATATTGCTTATGCGAATGGGTTGAGATGGTTTGGTGCGGATTAT
TCAGCCTATGACACAAAACGTGAAAAAACTTTAAAATTATTGTCAGGAAGTGTTAACTGGCTCCGTCCAATAGTCATGTT
TGATCGATCGCTGACTTACCAAGCGCGTATTGGTGCTCAATATGGCTTTGATAGTTTGTATTCGGAAAATCAATTTTCTA
TTGGTGATGAATATACTGTCAGAGGATTTAAAGGTGGAGCTGCTTCAGGCGACAGTGGTGCGTATTTTTCACAAACCCTT
AGCATCCCTTTTTATCCACAAAAAGCTTACCTTTCTCAAATATCACCTTTCGTTGGAGTGGATATTGGTAAGGTACATGT
CAAACAATCTCATCAAACAGATACCCTTGCAGGTTTTGCGCTAGGGGTGAAGGGACAAGTGAGATTATTCAATTTCTCAT
TCACTTATGCTCAACCACTCAACACGGTAAGAAAAGTGAAACCGCAGGATAAAAAACCGGTTTATTACGTCAGTGGTTCT
GTTTCTTTTTAA

Upstream 100 bases:

>100_bases
GCAGTTTTTAGAAGATAAACAAGCCGTTGAAGAAGAGGCAAAGTCAACCCTTGCGACAGATAGCGTAGATGAAACATCGA
AAAAAATCACGCGTATAACC

Downstream 100 bases:

>100_bases
TGTTTTTTAAGTTGAAGGATTAACTTAGTATGAATAAAAATCGCTATAAACTCATTTTTAGTAAAACTAAAGGCTGTCTT
GTACCTGTTGCTGAAACGAT

Product: LspB

Products: NA

Alternate protein names: TpsB transporter [H]

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MDLGGKGGALNFDEVSQRYLNKPLSTKVVFQLVKDLTDLLYRSGYVTSAIGLKNPKIKNGDLEFVVLWGTVNDILVAGEK
ATHFRDKAMLAVLPNLKNKLLNVYDIDQMVEILNTTNKSAKVSVVASQEKGASNLNIERVRNDWPEVTLSINNSGTENNA
NGRNQASLNVAWSDLLGTNDRWSFSTGYRFYKHSKANQQRNYALSYVQPLSFSTLELKLAESEYKKSLQGENDVYTSSGK
TQTATLKLSHVLLRNKETILSVYGELEFKKRLSYFSDIEIGDYHNNKLNIGLSYVTNLGYGKLYSDIAYANGLRWFGADY
SAYDTKREKTLKLLSGSVNWLRPIVMFDRSLTYQARIGAQYGFDSLYSENQFSIGDEYTVRGFKGGAASGDSGAYFSQTL
SIPFYPQKAYLSQISPFVGVDIGKVHVKQSHQTDTLAGFALGVKGQVRLFNFSFTYAQPLNTVRKVKPQDKKPVYYVSGS
VSF

Sequences:

>Translated_483_residues
MDLGGKGGALNFDEVSQRYLNKPLSTKVVFQLVKDLTDLLYRSGYVTSAIGLKNPKIKNGDLEFVVLWGTVNDILVAGEK
ATHFRDKAMLAVLPNLKNKLLNVYDIDQMVEILNTTNKSAKVSVVASQEKGASNLNIERVRNDWPEVTLSINNSGTENNA
NGRNQASLNVAWSDLLGTNDRWSFSTGYRFYKHSKANQQRNYALSYVQPLSFSTLELKLAESEYKKSLQGENDVYTSSGK
TQTATLKLSHVLLRNKETILSVYGELEFKKRLSYFSDIEIGDYHNNKLNIGLSYVTNLGYGKLYSDIAYANGLRWFGADY
SAYDTKREKTLKLLSGSVNWLRPIVMFDRSLTYQARIGAQYGFDSLYSENQFSIGDEYTVRGFKGGAASGDSGAYFSQTL
SIPFYPQKAYLSQISPFVGVDIGKVHVKQSHQTDTLAGFALGVKGQVRLFNFSFTYAQPLNTVRKVKPQDKKPVYYVSGS
VSF
>Mature_483_residues
MDLGGKGGALNFDEVSQRYLNKPLSTKVVFQLVKDLTDLLYRSGYVTSAIGLKNPKIKNGDLEFVVLWGTVNDILVAGEK
ATHFRDKAMLAVLPNLKNKLLNVYDIDQMVEILNTTNKSAKVSVVASQEKGASNLNIERVRNDWPEVTLSINNSGTENNA
NGRNQASLNVAWSDLLGTNDRWSFSTGYRFYKHSKANQQRNYALSYVQPLSFSTLELKLAESEYKKSLQGENDVYTSSGK
TQTATLKLSHVLLRNKETILSVYGELEFKKRLSYFSDIEIGDYHNNKLNIGLSYVTNLGYGKLYSDIAYANGLRWFGADY
SAYDTKREKTLKLLSGSVNWLRPIVMFDRSLTYQARIGAQYGFDSLYSENQFSIGDEYTVRGFKGGAASGDSGAYFSQTL
SIPFYPQKAYLSQISPFVGVDIGKVHVKQSHQTDTLAGFALGVKGQVRLFNFSFTYAQPLNTVRKVKPQDKKPVYYVSGS
VSF

Specific function: Possible member (with ibpA) of a two partner secretion pathway (TPS) in which it would mediate the secretion of protein ibpA (high molecular weight immunoglobulin-binding protein) [H]

COG id: COG2831

COG function: function code U; Hemolysin activation/secretion protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tpsB (TC 1.B.20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005565
- InterPro:   IPR013686 [H]

Pfam domain/function: PF08479 POTRA_2; PF03865 ShlB [H]

EC number: NA

Molecular weight: Translated: 54025; Mature: 54025

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLGGKGGALNFDEVSQRYLNKPLSTKVVFQLVKDLTDLLYRSGYVTSAIGLKNPKIKNG
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
DLEFVVLWGTVNDILVAGEKATHFRDKAMLAVLPNLKNKLLNVYDIDQMVEILNTTNKSA
CEEEEEEEECCCEEEEECCCHHHHHHHHHEEHHHHHHHHHCCHHHHHHHHHHHHCCCCCE
KVSVVASQEKGASNLNIERVRNDWPEVTLSINNSGTENNANGRNQASLNVAWSDLLGTND
EEEEEEECCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEHHHCCCCC
RWSFSTGYRFYKHSKANQQRNYALSYVQPLSFSTLELKLAESEYKKSLQGENDVYTSSGK
CCEECCCCCEEECCCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHCCCCCCEEECCCC
TQTATLKLSHVLLRNKETILSVYGELEFKKRLSYFSDIEIGDYHNNKLNIGLSYVTNLGY
CEEEEEEEEHHHHCCCHHHHHHHHCHHHHHHHHHHHCCEECCCCCCEEEEEHHHHHCCCC
GKLYSDIAYANGLRWFGADYSAYDTKREKTLKLLSGSVNWLRPIVMFDRSLTYQARIGAQ
HHHHHHHHHHCCCEEECCCCCHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCC
YGFDSLYSENQFSIGDEYTVRGFKGGAASGDSGAYFSQTLSIPFYPQKAYLSQISPFVGV
CCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHCC
DIGKVHVKQSHQTDTLAGFALGVKGQVRLFNFSFTYAQPLNTVRKVKPQDKKPVYYVSGS
CEEEEEEECCCCCCHHEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCCCCCCEEEEECC
VSF
CCC
>Mature Secondary Structure
MDLGGKGGALNFDEVSQRYLNKPLSTKVVFQLVKDLTDLLYRSGYVTSAIGLKNPKIKNG
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
DLEFVVLWGTVNDILVAGEKATHFRDKAMLAVLPNLKNKLLNVYDIDQMVEILNTTNKSA
CEEEEEEEECCCEEEEECCCHHHHHHHHHEEHHHHHHHHHCCHHHHHHHHHHHHCCCCCE
KVSVVASQEKGASNLNIERVRNDWPEVTLSINNSGTENNANGRNQASLNVAWSDLLGTND
EEEEEEECCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEHHHCCCCC
RWSFSTGYRFYKHSKANQQRNYALSYVQPLSFSTLELKLAESEYKKSLQGENDVYTSSGK
CCEECCCCCEEECCCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHCCCCCCEEECCCC
TQTATLKLSHVLLRNKETILSVYGELEFKKRLSYFSDIEIGDYHNNKLNIGLSYVTNLGY
CEEEEEEEEHHHHCCCHHHHHHHHCHHHHHHHHHHHCCEECCCCCCEEEEEHHHHHCCCC
GKLYSDIAYANGLRWFGADYSAYDTKREKTLKLLSGSVNWLRPIVMFDRSLTYQARIGAQ
HHHHHHHHHHCCCEEECCCCCHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCC
YGFDSLYSENQFSIGDEYTVRGFKGGAASGDSGAYFSQTLSIPFYPQKAYLSQISPFVGV
CCCHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHCC
DIGKVHVKQSHQTDTLAGFALGVKGQVRLFNFSFTYAQPLNTVRKVKPQDKKPVYYVSGS
CEEEEEEECCCCCCHHEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCCCCCCEEEEECC
VSF
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA