Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 15595080

GI number: 15595080

Start: 776746

End: 777573

Strand: Direct

Name: rlpA [H]

Synonym: BB0735

Alternate gene names: 15595080

Gene position: 776746-777573 (Clockwise)

Preceding gene: 15595078

Following gene: 15595081

Centisome position: 85.29

GC content: 31.04

Gene sequence:

>828_bases
TTGTTTATTGAAATATGTTTTTATATTATAATAAACATTATGAGAAATTTAATTGATGCCATCTTAAGAGATAATAAAAA
CTTTGTTTTTCTCTTTGTATTTTTTTTTATTGCTTCTCATTTAAATTCTGCCACAGTGGGTCTTGCTTCATGGTATGGCG
AAGCTTTTCACGGCAAAACTACTGCTAATGGCGAAAAATTTGATATGATGGCGCTTACTGCTGCTCACAAAGAATTGCCC
TTTAATACTACCGTAAAGGTTACAAATCTTTTAAATAATAGATCAGTTGTTGTAAGAATTAATGATAGAGGTCCTTTTAG
GAAGGATAGAATAATCGATTTGTCAAAATATGCCGCTGAGAAGCTTGATTTTTTAGGAATAGGGGTTGCTCCTGTAAAAA
TTGAAGTGATTGAAAGTTCGAATGAAAAAAGACCTTCTGTATCAAAATCTAGTGACTTTAAAAAAACATTTAATATTCCT
GGGGTTAAAGAAGAAAAGAAAACCAAGCAATCAGACGAAAATATTTCTGTTAAAAATAAATCCAAAGATTTATTGGCAGA
TTACTCAGTTTCTGCTGACAAAGAAACAGATTTTTACATACAAGTTGGATCTTATAGGAAAAAAGATTACGCTGATAGGG
CTTATCGAATATTAAAAAAAGCGGGTCTTTTTGTTGTAGTAAATTCTCATGGGCCGTTTTATACCGTTTTTATTCCTACT
AATGCCGATGATGTTCAAAAAAATATAGAACTTATTAAATCTGCTGGATATAAAGATACTTTAATAAGAAAAACCAAGGT
TCCAGGCGAGAGCCTTATTATGGATTGA

Upstream 100 bases:

>100_bases
TTTGGCTGCTGCTAATTATTTCTGTTGATATCATTTTTTAGACTTTTTTCTTTTTATAATTAAATCAAAAAAAATGTAAA
TAAGCAATTTGCAAGCTTAA

Downstream 100 bases:

>100_bases
TTTTTTAAATTATTTTTTTATTAAAATTATTTATTAACTTTTTAAAATTTTATGATTATGTCCTTTATTGCCGGTCCTTT
TGTGGTATTTCTTTATTTTA

Product: lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MFIEICFYIIINIMRNLIDAILRDNKNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKTTANGEKFDMMALTAAHKELP
FNTTVKVTNLLNNRSVVVRINDRGPFRKDRIIDLSKYAAEKLDFLGIGVAPVKIEVIESSNEKRPSVSKSSDFKKTFNIP
GVKEEKKTKQSDENISVKNKSKDLLADYSVSADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPT
NADDVQKNIELIKSAGYKDTLIRKTKVPGESLIMD

Sequences:

>Translated_275_residues
MFIEICFYIIINIMRNLIDAILRDNKNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKTTANGEKFDMMALTAAHKELP
FNTTVKVTNLLNNRSVVVRINDRGPFRKDRIIDLSKYAAEKLDFLGIGVAPVKIEVIESSNEKRPSVSKSSDFKKTFNIP
GVKEEKKTKQSDENISVKNKSKDLLADYSVSADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPT
NADDVQKNIELIKSAGYKDTLIRKTKVPGESLIMD
>Mature_275_residues
MFIEICFYIIINIMRNLIDAILRDNKNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKTTANGEKFDMMALTAAHKELP
FNTTVKVTNLLNNRSVVVRINDRGPFRKDRIIDLSKYAAEKLDFLGIGVAPVKIEVIESSNEKRPSVSKSSDFKKTFNIP
GVKEEKKTKQSDENISVKNKSKDLLADYSVSADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPT
NADDVQKNIELIKSAGYKDTLIRKTKVPGESLIMD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=78, Percent_Identity=50, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 31165; Mature: 31165

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIEICFYIIINIMRNLIDAILRDNKNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKT
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHCHHHCCCC
TANGEKFDMMALTAAHKELPFNTTVKVTNLLNNRSVVVRINDRGPFRKDRIIDLSKYAAE
CCCCCCEEHEEEEHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEHHHHHHH
KLDFLGIGVAPVKIEVIESSNEKRPSVSKSSDFKKTFNIPGVKEEKKTKQSDENISVKNK
HHHEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHHCCCCCCCEECCC
SKDLLADYSVSADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPT
CCHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEEC
NADDVQKNIELIKSAGYKDTLIRKTKVPGESLIMD
CHHHHHHHHHHHHHCCCCHHHHEECCCCCHHHCCC
>Mature Secondary Structure
MFIEICFYIIINIMRNLIDAILRDNKNFVFLFVFFFIASHLNSATVGLASWYGEAFHGKT
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCHHHHHHHHHCHHHCCCC
TANGEKFDMMALTAAHKELPFNTTVKVTNLLNNRSVVVRINDRGPFRKDRIIDLSKYAAE
CCCCCCEEHEEEEHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEHHHHHHH
KLDFLGIGVAPVKIEVIESSNEKRPSVSKSSDFKKTFNIPGVKEEKKTKQSDENISVKNK
HHHEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHHCCCCCCCEECCC
SKDLLADYSVSADKETDFYIQVGSYRKKDYADRAYRILKKAGLFVVVNSHGPFYTVFIPT
CCHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEEC
NADDVQKNIELIKSAGYKDTLIRKTKVPGESLIMD
CHHHHHHHHHHHHHCCCCHHHHEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]