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The map label for this gene is rbgA [H]

Identifier: 15594988

GI number: 15594988

Start: 681685

End: 682524

Strand: Reverse

Name: rbgA [H]

Synonym: BB0643

Alternate gene names: 15594988

Gene position: 682524-681685 (Counterclockwise)

Preceding gene: 15594991

Following gene: 15594987

Centisome position: 74.94

GC content: 24.88

Gene sequence:

>840_bases
ATGGCAAATAAAATCAACTGGTTTCCTGGACATATGAAAAGGGCCTTAGATCTGATAAAGAATAATTTACAAAAAGCTAA
TATTGTGCTAGAAATACTTGATGCTAGAGCTCCATTTAGCAGTAAAAATCCATTAACTGAAAAAATTACTAAAAATCAAG
CTAAAATAATTCTTCTACACAAATCAGATGTTGCTCAAATAAATGAAATTATAAAATGGAAAAAATATTTTGAAAATCTT
GGCAATACTGTAATAATAAGCAATATTTACAAAAAAGGAATGCGTAAGCAGATAATAGATATTATTAAAAAATTGGCCAT
TGTTAAAAAGATAAAAAACTATAAAGAAAAAATAAAGGTTTTGATTATTGGAGTTCCAAATGTTGGAAAATCTTCAATAA
TAAATCTATTATCCGGCAAAAAGAGCGCAAAAGTTGCCAATAAACCTGGATATACTAAAAATATACAAATAGTAAAAATA
AATGAAGAAATAAATCTTTTTGATATGCCAGGGATTTTATGGCATAATCTAGTAGACCAATCGATTGCAAAAAAACTTGC
AATATTGGATATGATCAAAAATGAAATAGTAGATAACACAGATCTTGCATTGTATTTACTTGAAATAATGGATCAAAATA
ATAAAAATATTTTACTAAAAAAATACGAAATATATCATAAAAATTCACTTGATATTCTACAAAATTTTGCAAAAGCAAGA
AAATTAATCGGTAAAAAAAATGAACTTAACCTTGAAAAAGCATCAAAAATATTAATCAAAGAATTTAGAGAGGGTAAATT
TGGCAAAATAATTCTTGATAAGAATTATAATGCCTTTTAA

Upstream 100 bases:

>100_bases
ATTTTTTATTTAAAAAAAAACAATTCTTTTAAAGAAAACTAACATAAACTAAAAACAAAAACAATTTATCATTCAATACA
CATTAAGCTATAATTTAGGC

Downstream 100 bases:

>100_bases
AAAAGGCATTTACATAAATAATAATATTAAGTATAATCTTGATTTGTATTAATACAGCCATAAGGAGGTTGGAATTAGTT
GGATAATTGTATCCTAGAGA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MANKINWFPGHMKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLHKSDVAQINEIIKWKKYFENL
GNTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKI
NEEINLFDMPGILWHNLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR
KLIGKKNELNLEKASKILIKEFREGKFGKIILDKNYNAF

Sequences:

>Translated_279_residues
MANKINWFPGHMKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLHKSDVAQINEIIKWKKYFENL
GNTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKI
NEEINLFDMPGILWHNLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR
KLIGKKNELNLEKASKILIKEFREGKFGKIILDKNYNAF
>Mature_278_residues
ANKINWFPGHMKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLHKSDVAQINEIIKWKKYFENLG
NTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKVLIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKIN
EEINLFDMPGILWHNLVDQSIAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKARK
LIGKKNELNLEKASKILIKEFREGKFGKIILDKNYNAF

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=291, Percent_Identity=28.8659793814433, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI45643129, Length=266, Percent_Identity=27.8195488721804, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI45643127, Length=266, Percent_Identity=27.8195488721804, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI45593130, Length=266, Percent_Identity=27.8195488721804, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7019419, Length=269, Percent_Identity=25.2788104089219, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI296317324, Length=181, Percent_Identity=28.1767955801105, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI9506611, Length=181, Percent_Identity=28.1767955801105, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17534827, Length=250, Percent_Identity=30, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193211047, Length=317, Percent_Identity=24.9211356466877, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25143545, Length=279, Percent_Identity=22.5806451612903, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=280, Percent_Identity=24.2857142857143, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71982363, Length=182, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324381, Length=272, Percent_Identity=26.1029411764706, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323744, Length=244, Percent_Identity=27.8688524590164, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6320842, Length=289, Percent_Identity=25.6055363321799, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI85815858, Length=301, Percent_Identity=28.2392026578073, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI28572990, Length=250, Percent_Identity=27.2, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI19922460, Length=267, Percent_Identity=24.3445692883895, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32071; Mature: 31940

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKINWFPGHMKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEEE
KSDVAQINEIIKWKKYFENLGNTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKV
CCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
LIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEEINLFDMPGILWHNLVDQ
EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHH
SIAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEHHCCCCHHHHHHHHHHH
KLIGKKNELNLEKASKILIKEFREGKFGKIILDKNYNAF
HHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
ANKINWFPGHMKRALDLIKNNLQKANIVLEILDARAPFSSKNPLTEKITKNQAKIILLH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEEE
KSDVAQINEIIKWKKYFENLGNTVIISNIYKKGMRKQIIDIIKKLAIVKKIKNYKEKIKV
CCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
LIIGVPNVGKSSIINLLSGKKSAKVANKPGYTKNIQIVKINEEINLFDMPGILWHNLVDQ
EEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHH
SIAKKLAILDMIKNEIVDNTDLALYLLEIMDQNNKNILLKKYEIYHKNSLDILQNFAKAR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEHHCCCCHHHHHHHHHHH
KLIGKKNELNLEKASKILIKEFREGKFGKIILDKNYNAF
HHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]