Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 15594764

GI number: 15594764

Start: 429693

End: 430616

Strand: Reverse

Name: cph2 [H]

Synonym: BB0419

Alternate gene names: 15594764

Gene position: 430616-429693 (Counterclockwise)

Preceding gene: 15594765

Following gene: 15594758

Centisome position: 47.28

GC content: 30.95

Gene sequence:

>924_bases
GTGGAAATGATAATTAAAGATAAAGCTTTTGAAGCAGAGAATCAGAAGCTTTTAATTGTGGATGATTCTCCCCACAATTT
AGATTTATTGGTAAATATATTGCAAGGTGCTTACGAGATTGAGGTTGCAACAAATGGACTTGATGCTTTAAAGCAAGTTG
AAAAAGATAGTCCTGATCTTATACTTCTTGACATAGGTCTTCCAGATATTAACGGTTATGAGGTATGCAGAAAGCTAAAA
AGCGATCCCGATACTAAAGAGATTCCTGTAATTTTCATTAGTTCAAGAAGTTCCACAGATGCTCAGCTTGAAGGATTTAA
CGTTGGTGGAGTAGATTATATTTTAAAGCCTTTTAATAGTCGAATAATTGATGCTAGAGTTAAGACACATCTTGAATTAA
AAAGGTTAAGAGATTATTTTAAAAGCTTGTCTAGAATTGATGGGCTTACTCAAATTCCAAACAGAAGATTTTTTATGGAT
AAATTTTCTAAGTCGTGGATGAAAGCTTTAGAAAGTAAAGAAATAATAATTGTTGGAATGTTAGATATTGATAATTTTAA
AAATTACAATGATAATTATGGCCATACCAATGGTGATGAATGTCTTAAATTGATTGCTAAAGCCTTATATAAGGTTTCCT
TAAAATATAAAATAGATGTTGCTCGATATGGAGGGGAAGAATTTATTTTTTTTTCTGTCAACAAAAGTCTAAATGAAATG
GTTAGTATTATTAAAACAATGATTAATGATATAAAACGCTTAAGAATAGTTCATGAGCACAGTAGTGTTTCTGGCATTGT
TACTGTTTCAATTGGGCTTGCTCAAGAAGTTCCTATTGATAACAATTTTACCAATATCATAAGGCTTGCTGATCGCAAGC
TTTATGAGGCTAAAGTTTCTGGAAGAAATCAGTTTAGATATTAA

Upstream 100 bases:

>100_bases
TTAGTGATCTTCGCAGAAATTTAAGATTATATAGATTTGCTGAGAGCTCTAAGATTCTTGAAGAGATTATTGAAATGCTT
AATAATAAGAGATATTAGCA

Downstream 100 bases:

>100_bases
ATTTATATTTAATAGACTTTAGTATTTATAAGTTATAGACATTCCAATAGAATCGTAATAAAAATAAGAATTGCCAGTTG
CTATTCTTTTTGAAATATCA

Product: response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEMIIKDKAFEAENQKLLIVDDSPHNLDLLVNILQGAYEIEVATNGLDALKQVEKDSPDLILLDIGLPDINGYEVCRKLK
SDPDTKEIPVIFISSRSSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLELKRLRDYFKSLSRIDGLTQIPNRRFFMD
KFSKSWMKALESKEIIIVGMLDIDNFKNYNDNYGHTNGDECLKLIAKALYKVSLKYKIDVARYGGEEFIFFSVNKSLNEM
VSIIKTMINDIKRLRIVHEHSSVSGIVTVSIGLAQEVPIDNNFTNIIRLADRKLYEAKVSGRNQFRY

Sequences:

>Translated_307_residues
MEMIIKDKAFEAENQKLLIVDDSPHNLDLLVNILQGAYEIEVATNGLDALKQVEKDSPDLILLDIGLPDINGYEVCRKLK
SDPDTKEIPVIFISSRSSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLELKRLRDYFKSLSRIDGLTQIPNRRFFMD
KFSKSWMKALESKEIIIVGMLDIDNFKNYNDNYGHTNGDECLKLIAKALYKVSLKYKIDVARYGGEEFIFFSVNKSLNEM
VSIIKTMINDIKRLRIVHEHSSVSGIVTVSIGLAQEVPIDNNFTNIIRLADRKLYEAKVSGRNQFRY
>Mature_307_residues
MEMIIKDKAFEAENQKLLIVDDSPHNLDLLVNILQGAYEIEVATNGLDALKQVEKDSPDLILLDIGLPDINGYEVCRKLK
SDPDTKEIPVIFISSRSSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLELKRLRDYFKSLSRIDGLTQIPNRRFFMD
KFSKSWMKALESKEIIIVGMLDIDNFKNYNDNYGHTNGDECLKLIAKALYKVSLKYKIDVARYGGEEFIFFSVNKSLNEM
VSIIKTMINDIKRLRIVHEHSSVSGIVTVSIGLAQEVPIDNNFTNIIRLADRKLYEAKVSGRNQFRY

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1790860, Length=120, Percent_Identity=38.3333333333333, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=174, Percent_Identity=31.6091954022989, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=31.4285714285714, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=31.25, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788394, Length=119, Percent_Identity=36.1344537815126, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=33.1325301204819, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=31.7073170731707, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786784, Length=117, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082012, Length=169, Percent_Identity=28.4023668639053, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786599, Length=116, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=26.5536723163842, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787056, Length=179, Percent_Identity=31.8435754189944, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789809, Length=120, Percent_Identity=30.8333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788550, Length=132, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=32.0987654320988, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790437, Length=109, Percent_Identity=30.2752293577982, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=29.6296296296296, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 35075; Mature: 35075

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMIIKDKAFEAENQKLLIVDDSPHNLDLLVNILQGAYEIEVATNGLDALKQVEKDSPDL
CCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCE
ILLDIGLPDINGYEVCRKLKSDPDTKEIPVIFISSRSSTDAQLEGFNVGGVDYILKPFNS
EEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEECCCCCCCHHHHHHCCCC
RIIDARVKTHLELKRLRDYFKSLSRIDGLTQIPNRRFFMDKFSKSWMKALESKEIIIVGM
CEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
LDIDNFKNYNDNYGHTNGDECLKLIAKALYKVSLKYKIDVARYGGEEFIFFSVNKSLNEM
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEEECCCCHHHH
VSIIKTMINDIKRLRIVHEHSSVSGIVTVSIGLAQEVPIDNNFTNIIRLADRKLYEAKVS
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHCC
GRNQFRY
CCCCCCC
>Mature Secondary Structure
MEMIIKDKAFEAENQKLLIVDDSPHNLDLLVNILQGAYEIEVATNGLDALKQVEKDSPDL
CCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCE
ILLDIGLPDINGYEVCRKLKSDPDTKEIPVIFISSRSSTDAQLEGFNVGGVDYILKPFNS
EEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEECCCCCCCHHHHHHCCCC
RIIDARVKTHLELKRLRDYFKSLSRIDGLTQIPNRRFFMDKFSKSWMKALESKEIIIVGM
CEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
LDIDNFKNYNDNYGHTNGDECLKLIAKALYKVSLKYKIDVARYGGEEFIFFSVNKSLNEM
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEEECCCCHHHH
VSIIKTMINDIKRLRIVHEHSSVSGIVTVSIGLAQEVPIDNNFTNIIRLADRKLYEAKVS
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHCC
GRNQFRY
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]