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The map label for this gene is fliN

Identifier: 15594622

GI number: 15594622

Start: 289576

End: 289917

Strand: Reverse

Name: fliN

Synonym: BB0277

Alternate gene names: 15594622

Gene position: 289917-289576 (Counterclockwise)

Preceding gene: 15594623

Following gene: 15594621

Centisome position: 31.83

GC content: 35.67

Gene sequence:

>342_bases
ATGAGTGTAGATGAAAAAAGTGATAATGGAGAAAAGCCGGAAATAAAGGGGGTTAAGCTTCCCGATTTAATTGATACTTT
ACCAGAGGGGGTTGATCCTAGTAATTTTGGGCTTTTAATGGATGTTTCTATGCAGCTTACTGTAGAGCTTGGAAGAACAG
AGCGCAAAATAAAAGACATACTTGGCATGTCTGAAGGGACTATTATTACTCTTGACAAACTTGCCGGTGAGCCTGTGGAT
ATTTTAGTAAACGGTAAAATAGTTGCCAAGGGAGAAGTAGTTGTAATTGATGAAAATTTTGGAGTTAGAATTACTGAGAT
AATTAAAACTAAAAATGAATAA

Upstream 100 bases:

>100_bases
TGGAGATATAAAAGGTTTTGATTTATTAAAAGAGCTTACAGAAGAGGTTGAATGATAGTTGTTTTATTTATTAAAACTTA
AATTATTAAGAGGTTGAATT

Downstream 100 bases:

>100_bases
TAAATTTTTATTTTTAGTTTTTTTATCGTTTTTTAATTTTTTTACATATGCTAATTCACAAGAGCAGGTAAATTCAGCAT
CTACCGATTTAGAAAATGAA

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSVDEKSDNGEKPEIKGVKLPDLIDTLPEGVDPSNFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVD
ILVNGKIVAKGEVVVIDENFGVRITEIIKTKNE

Sequences:

>Translated_113_residues
MSVDEKSDNGEKPEIKGVKLPDLIDTLPEGVDPSNFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVD
ILVNGKIVAKGEVVVIDENFGVRITEIIKTKNE
>Mature_112_residues
SVDEKSDNGEKPEIKGVKLPDLIDTLPEGVDPSNFGLLMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDI
LVNGKIVAKGEVVVIDENFGVRITEIIKTKNE

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family

Homologues:

Organism=Escherichia coli, GI1788256, Length=71, Percent_Identity=56.3380281690141, Blast_Score=90, Evalue=4e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLIN_BORBU (Q44903)

Other databases:

- EMBL:   U43739
- EMBL:   L75945
- EMBL:   AE000783
- PIR:   E70134
- RefSeq:   NP_212411.1
- ProteinModelPortal:   Q44903
- SMR:   Q44903
- EnsemblBacteria:   EBBORT00000008710
- GeneID:   1195114
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0277
- NMPDR:   fig|224326.1.peg.661
- TIGR:   BB_0277
- GeneTree:   EBGT00050000007471
- HOGENOM:   HBG536886
- OMA:   VEIGRTK
- PhylomeDB:   Q44903
- ProtClustDB:   CLSK507488
- BioCyc:   BBUR224326:BB_0277-MONOMER
- GO:   GO:0006935
- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543
- PRINTS:   PR00956
- TIGRFAMs:   TIGR02480

Pfam domain/function: PF01052 SpoA; SSF101801 SpoA

EC number: NA

Molecular weight: Translated: 12305; Mature: 12174

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVDEKSDNGEKPEIKGVKLPDLIDTLPEGVDPSNFGLLMDVSMQLTVELGRTERKIKDI
CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHHH
LGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDENFGVRITEIIKTKNE
HCCCCCCEEEECCCCCCCEEEEECCEEEECCCEEEEECCCCEEEEEEEECCCC
>Mature Secondary Structure 
SVDEKSDNGEKPEIKGVKLPDLIDTLPEGVDPSNFGLLMDVSMQLTVELGRTERKIKDI
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHHH
LGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDENFGVRITEIIKTKNE
HCCCCCCEEEECCCCCCCEEEEECCEEEECCCEEEEECCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685