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The map label for this gene is fliR

Identifier: 15594618

GI number: 15594618

Start: 287089

End: 287898

Strand: Reverse

Name: fliR

Synonym: BB0273

Alternate gene names: 15594618

Gene position: 287898-287089 (Counterclockwise)

Preceding gene: 15594619

Following gene: 15594617

Centisome position: 31.61

GC content: 25.06

Gene sequence:

>810_bases
TTGTACTATTGGGATGAAATTTTGAATTTAAATTTTTTGGTTTTAAAATCTTTTACAATTTTACCTGTGTTGGTTAGAAT
TTTTATGTTTTTAAAATTTTCTCCATTTTTTTCAACAATAAAAATTGGATATTTTAATTTTTTCTTTTCTTTGATTCTCT
CCGTAATTGTTGTTGAAAAGATTAAAATTATTTATCCTTTAGACAATATGCTTTCTTTTGCGTTAATTTTATTAGGAGAA
GCTATTTTAGGTCTTATTCAGGCATTTTTTGTTAATATAATTTTTAATGTTTTTCATTTGGTTGGATTTTTCTTTTCTAA
TCAAATTGGGCTTGCTTATGCAAATATTTTTGATGTTTTTTCAGAAGAAGATAGCATGATTATTTCACAAATTTTTGCTT
ATTTGTTTTTGCTTTTGTTCTTATCAAGCGATTTTTTACTTCGTTTTTTTGTGATTGGCATACATGATTCTGTTTTGAAC
ATTAGGGTTGAACATTTGGTCAATATGAGAAATTCAGGATTTGTCAAGCTTTTGCTTATGTCTTTTGGATTTCTTTTTGA
AAAAGCTTTATTAATTTCGTTTCCAATATTGTCTTTGCTTTTACTTTTTTATCTAGTATTGGGAATACTTTCAAAGTCAT
CGCCTCAAATTAATTTATTAATAATTAGCTTTTCAACCTCGCTATTTTTAGGGTTGTTAATTTTATATATTGGATTTCCA
AGCTTAGCAATATCTTCAAAAAGAGTGATTGAACTTTCACTAGATTCTCTTGCTAGTTTTTTAAAATTGTTTTCTAGAGT
TTTAAAATAA

Upstream 100 bases:

>100_bases
TTTTAGTTATTGTGATTTTTGGTCCTTGGATTTTGAATAAGCTTATGCAGTTTACCTATATGATTTTTAGTCAATTGCAA
AATGTTTAATTTATGACTAA

Downstream 100 bases:

>100_bases
TGATAAAAGATGAATTTTTGATTAAAAGTTGGTATATTCCCCTTGATTTTTTTTCCGCAGATGATGAGGGAAGAACCGAA
TTACCTACTGACCAGAAAAA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MYYWDEILNLNFLVLKSFTILPVLVRIFMFLKFSPFFSTIKIGYFNFFFSLILSVIVVEKIKIIYPLDNMLSFALILLGE
AILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFAYLFLLLFLSSDFLLRFFVIGIHDSVLN
IRVEHLVNMRNSGFVKLLLMSFGFLFEKALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFP
SLAISSKRVIELSLDSLASFLKLFSRVLK

Sequences:

>Translated_269_residues
MYYWDEILNLNFLVLKSFTILPVLVRIFMFLKFSPFFSTIKIGYFNFFFSLILSVIVVEKIKIIYPLDNMLSFALILLGE
AILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFAYLFLLLFLSSDFLLRFFVIGIHDSVLN
IRVEHLVNMRNSGFVKLLLMSFGFLFEKALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFP
SLAISSKRVIELSLDSLASFLKLFSRVLK
>Mature_269_residues
MYYWDEILNLNFLVLKSFTILPVLVRIFMFLKFSPFFSTIKIGYFNFFFSLILSVIVVEKIKIIYPLDNMLSFALILLGE
AILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVFSEEDSMIISQIFAYLFLLLFLSSDFLLRFFVIGIHDSVLN
IRVEHLVNMRNSGFVKLLLMSFGFLFEKALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFP
SLAISSKRVIELSLDSLASFLKLFSRVLK

Specific function: Role in flagellar biosynthesis

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FLIR_BORBU (Q44907)

Other databases:

- EMBL:   U43739
- EMBL:   L75945
- EMBL:   AE000783
- PIR:   A70134
- RefSeq:   NP_212407.1
- EnsemblBacteria:   EBBORT00000008923
- GeneID:   1195110
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0273
- NMPDR:   fig|224326.1.peg.657
- TIGR:   BB_0273
- GeneTree:   EBGT00050000007525
- HOGENOM:   HBG352878
- OMA:   GIWIVVT
- ProtClustDB:   CLSK507485
- BioCyc:   BBUR224326:BB_0273-MONOMER
- InterPro:   IPR006303
- InterPro:   IPR002010
- PRINTS:   PR00953
- TIGRFAMs:   TIGR01400

Pfam domain/function: PF01311 Bac_export_1

EC number: NA

Molecular weight: Translated: 30877; Mature: 30877

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc2ce340)-; HASH(0xbe8c44c)-; HASH(0xb089a38)-; HASH(0xc87293c)-; HASH(0xc0ca9e0)-; HASH(0xc085b74)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYWDEILNLNFLVLKSFTILPVLVRIFMFLKFSPFFSTIKIGYFNFFFSLILSVIVVEK
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IKIIYPLDNMLSFALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SEEDSMIISQIFAYLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMRNSGFVKLLLM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
SFGFLFEKALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHCCC
SLAISSKRVIELSLDSLASFLKLFSRVLK
HHHHCCCHHHHHHHHHHHHHHHHHHHHHH
>Mature Secondary Structure
MYYWDEILNLNFLVLKSFTILPVLVRIFMFLKFSPFFSTIKIGYFNFFFSLILSVIVVEK
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IKIIYPLDNMLSFALILLGEAILGLIQAFFVNIIFNVFHLVGFFFSNQIGLAYANIFDVF
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SEEDSMIISQIFAYLFLLLFLSSDFLLRFFVIGIHDSVLNIRVEHLVNMRNSGFVKLLLM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
SFGFLFEKALLISFPILSLLLLFYLVLGILSKSSPQINLLIISFSTSLFLGLLILYIGFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHCCC
SLAISSKRVIELSLDSLASFLKLFSRVLK
HHHHCCCHHHHHHHHHHHHHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685