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The map label for this gene is nusB

Identifier: 15594453

GI number: 15594453

Start: 105418

End: 105855

Strand: Reverse

Name: nusB

Synonym: BB0107

Alternate gene names: 15594453

Gene position: 105855-105418 (Counterclockwise)

Preceding gene: 15594454

Following gene: 15594452

Centisome position: 11.62

GC content: 28.77

Gene sequence:

>438_bases
ATGGATTTAATGCATGAAGTTAGAGTTTTAGCTTTTCAAAAGATTTATAGCATTGATATTAATCAAAGCGCAATGGACGA
TATTTTTGATATTTTTAATATTGAAGATAAAGATTTAGACATAGAAAATGAGTCTATTAAGTCGTTTTACTCTTCTTTGG
TAATTGGTACTTTTGATAATTTAGAGCATATTGATAGCCTCATTAGGGATATTTCTTTGAATTGGTCTTTAGAACGCATG
GATAAGGTTGATCTTGCAATACTTAGGATGGGCGTCTATTCTTTGAAGTTCCAAAATTTTGAAAATTCAAAACGTGCTAT
AATTGATGAGGCAATTTTGATTGCCAAGAAATATGGCAGTAAAAACTCTTATAAGTTTATAAATGGTATACTTGATGCTT
TGCTTAAAAATATGGAGAGTGGTATTGAAAAAAAATAA

Upstream 100 bases:

>100_bases
GTACAGCAAGATATGTATGGTAAGCTTAACAAGTCTGCAAATATACAAATCTTGGATTCTAGTCTAAAATAAAACATATT
TTTATTTATATAATTTTATT

Downstream 100 bases:

>100_bases
AACTTTAGTGTTCATTTCATTATTCTTATTATCAGTTTTTTTAGGTGGCTTTTATTTCTATTTCGATCCCAATATTTTAT
ATCTTCTAAAAGGTGAGAAA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFDNLEHIDSLIRDISLNWSLERM
DKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYGSKNSYKFINGILDALLKNMESGIEKK

Sequences:

>Translated_145_residues
MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFDNLEHIDSLIRDISLNWSLERM
DKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYGSKNSYKFINGILDALLKNMESGIEKK
>Mature_145_residues
MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFDNLEHIDSLIRDISLNWSLERM
DKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYGSKNSYKFINGILDALLKNMESGIEKK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=125, Percent_Identity=31.2, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_BORBU (O51134)

Other databases:

- EMBL:   AE000783
- PIR:   C70113
- RefSeq:   NP_212241.1
- ProteinModelPortal:   O51134
- SMR:   O51134
- EnsemblBacteria:   EBBORT00000008757
- GeneID:   1194943
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0107
- NMPDR:   fig|224326.1.peg.491
- TIGR:   BB_0107
- GeneTree:   EBGT00050000007168
- HOGENOM:   HBG734409
- OMA:   DINQSAM
- PhylomeDB:   O51134
- ProtClustDB:   PRK00202
- BioCyc:   BBUR224326:BB_0107-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16809; Mature: 16809

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFDN
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYGS
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
KNSYKFINGILDALLKNMESGIEKK
CCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFDN
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKYGS
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
KNSYKFINGILDALLKNMESGIEKK
CCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685