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The map label for this gene is atpD

Identifier: 15594438

GI number: 15594438

Start: 89200

End: 89814

Strand: Reverse

Name: atpD

Synonym: BB0092

Alternate gene names: 15594438

Gene position: 89814-89200 (Counterclockwise)

Preceding gene: 15594439

Following gene: 15594437

Centisome position: 9.86

GC content: 27.97

Gene sequence:

>615_bases
TTGATTATGTCTAAAATTAAATTAACCAAAAATGATCTTAAAAAGCAAAAAGACGAACTTAAAATGTTTAAGAGATATTT
GCCTACTTTGCAGCTTAAGAAGCAGCAGCTTTATATGGAAATTGTTAAAATTGAGAATTCTTACAAAATTAAAAATCTTG
AGCAACAAAAACTTAAGGAGAATATTTCTAATTGGATTTCTCTTTTTAGCGAAAAATTTCCTTTTGAGAGTTGGATTCAA
GTAAAAACAGTAGTCAAAAAGTCTTTAAATATTGCTGGAGTTGCAATTCCTATATTCGATTCTATTGAATATGAAGACAT
AAGGCATGATTTACTTTTTACTCCTTATTGGGTAGATAAGGGGATTGAGATTCTTAAAGTTGTGATTCAAATTGATGTAG
AACTTAAAATTTTAAAAAAACAGATTGATTTGCTTTTAAGAGAGTTTAGAATAACATCTCAGAGGGTTAATTTATTTGAG
AAAGTTATGATACCAACAGCTAAGGCTAATATAAAAAAAATTAATATATATCTTGGAGATCAGCAAACCGCGGCTGTTGT
AAGAGGTAAGATTGCTAAATCTAGTTTGATAAAAAAAAATAGGAACAGCTTATGA

Upstream 100 bases:

>100_bases
TAGATTTAGGTTGGAGCATTCTTGCTAGTTGTTTTAGCCCAAAAGAAACGGGAATAAAAACAGATCTTATTGAAAAATAT
TGGCCTAAAAAAGAGACTTA

Downstream 100 bases:

>100_bases
TTGTAAAAATGAAAAAAGTGTTGCTTTTAACTTTATCAAAATATAAAAAAGAGTCATTAGAGATTTTAAGAGATTTTGGA
GCAGTTCATATTAATTCTTG

Product: V-type ATP synthase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MIMSKIKLTKNDLKKQKDELKMFKRYLPTLQLKKQQLYMEIVKIENSYKIKNLEQQKLKENISNWISLFSEKFPFESWIQ
VKTVVKKSLNIAGVAIPIFDSIEYEDIRHDLLFTPYWVDKGIEILKVVIQIDVELKILKKQIDLLLREFRITSQRVNLFE
KVMIPTAKANIKKINIYLGDQQTAAVVRGKIAKSSLIKKNRNSL

Sequences:

>Translated_204_residues
MIMSKIKLTKNDLKKQKDELKMFKRYLPTLQLKKQQLYMEIVKIENSYKIKNLEQQKLKENISNWISLFSEKFPFESWIQ
VKTVVKKSLNIAGVAIPIFDSIEYEDIRHDLLFTPYWVDKGIEILKVVIQIDVELKILKKQIDLLLREFRITSQRVNLFE
KVMIPTAKANIKKINIYLGDQQTAAVVRGKIAKSSLIKKNRNSL
>Mature_204_residues
MIMSKIKLTKNDLKKQKDELKMFKRYLPTLQLKKQQLYMEIVKIENSYKIKNLEQQKLKENISNWISLFSEKFPFESWIQ
VKTVVKKSLNIAGVAIPIFDSIEYEDIRHDLLFTPYWVDKGIEILKVVIQIDVELKILKKQIDLLLREFRITSQRVNLFE
KVMIPTAKANIKKINIYLGDQQTAAVVRGKIAKSSLIKKNRNSL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_BORBU (O51119)

Other databases:

- EMBL:   AE000783
- PIR:   D70111
- RefSeq:   NP_212226.1
- EnsemblBacteria:   EBBORT00000008532
- GeneID:   1194928
- GenomeReviews:   AE000783_GR
- KEGG:   bbu:BB0092
- NMPDR:   fig|224326.1.peg.476
- TIGR:   BB_0092
- GeneTree:   EBGT00050000007510
- HOGENOM:   HBG352980
- OMA:   LFEKVMI
- ProtClustDB:   PRK02195
- BioCyc:   BBUR224326:BB_0092-MONOMER
- BRENDA:   3.6.3.14
- HAMAP:   MF_00271
- InterPro:   IPR002699
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: 3.6.3.14

Molecular weight: Translated: 24026; Mature: 24026

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMSKIKLTKNDLKKQKDELKMFKRYLPTLQLKKQQLYMEIVKIENSYKIKNLEQQKLKE
CCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
NISNWISLFSEKFPFESWIQVKTVVKKSLNIAGVAIPIFDSIEYEDIRHDLLFTPYWVDK
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHH
GIEILKVVIQIDVELKILKKQIDLLLREFRITSQRVNLFEKVMIPTAKANIKKINIYLGD
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
QQTAAVVRGKIAKSSLIKKNRNSL
CHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIMSKIKLTKNDLKKQKDELKMFKRYLPTLQLKKQQLYMEIVKIENSYKIKNLEQQKLKE
CCCCHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
NISNWISLFSEKFPFESWIQVKTVVKKSLNIAGVAIPIFDSIEYEDIRHDLLFTPYWVDK
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHH
GIEILKVVIQIDVELKILKKQIDLLLREFRITSQRVNLFEKVMIPTAKANIKKINIYLGD
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
QQTAAVVRGKIAKSSLIKKNRNSL
CHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685