| Definition | Bacillus amyloliquefaciens FZB42, complete genome. |
|---|---|
| Accession | NC_009725 |
| Length | 3,918,589 |
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The map label for this gene is ytrB [H]
Identifier: 154687167
GI number: 154687167
Start: 2866396
End: 2867274
Strand: Reverse
Name: ytrB [H]
Synonym: RBAM_027390
Alternate gene names: 154687167
Gene position: 2867274-2866396 (Counterclockwise)
Preceding gene: 154687168
Following gene: 154687166
Centisome position: 73.17
GC content: 44.71
Gene sequence:
>879_bases ATGATTGAATTGCGGAATCTCTCAAAAACGATAGACGGTAAAGAAGTGCTCAAGGATATTTCGCTCACCATCGGAAAAGG GGAAATTTTCGGGCTGCTCGGGCGAAACGGATCAGGGAAAACAACACTGCTCCGGCTCATTCAGCAGATTCTGCTGCCGG ATCAAGGGACGGTTTTATTTAATCAGGTGGAAATAAAGCGGCATCCGAAAGTAAAACAGAACATCATTTATATGCCTGTT GAAAATCCTTTTTATGACAAGTATACATATAAACAGCTTGTTGCGATTGTAAGCAGAATCTATCCGAATTTTGATGTGAC TTACGCCAATGAGCTGATGAACAGGTACGGCATTCCGGAAACGAAGAAATACCGTGAATTATCGACAGGCCTGAAAAAAC AGCTTGCGCTCGTCCTTGCCTTTGCTTCACGCCCGGCTCTTATCCTTTTGGATGAACCGACGGACGGAATTGACGCCGTA ACGCGTCATGACGTGCTGCAGCTTATGGTGGATGAAGTGGCTGAACGGGAAACGAGCATTCTGATTACCTCACACCGTTT AGAAGATATTGAGCGAATGTGCAACCGGATCGGGTTTTTGGAAGGAAATCAGCTGACGAATGTGATGGACTTGGATGATA TGAAGGAAGAGTACATGAAAATCCAAATGGCATTTGAAGAAAACGTCGCCTTGAAGATCAGAGAACAAAACATACCGATT CTCGACCATGCCGGTGTGTTTTATACGGTGCTGATTCAAAAGAACGATGAAAAGAAAAAGAACTTTCTGCAAGAGCTGCA GCCGAAAGTATGGAACGAGCTTCCTGTGAACTTAGAAGAAGTCTTCATCGCGAAGTTTGGAGGGAACCGGAGATGGTAG
Upstream 100 bases:
>100_bases AAACAGCTCATCATCGATGCCCATTACGCGGGAGTTGAGCTGGAGAAGCTGCAGGAATGGATAAAGGAAATCAGCGCTGA TGTGAAAGGAGGCAAGGATC
Downstream 100 bases:
>100_bases ACAGGGGATTGCTGTACAGGGAATGGGTGCAGAATCGAACTGTTCTTGTGATGGTCGGCCTTTTTTTAGCCGCGGTCAAT CCATTTGAAGTGTTAAATAC
Product: YtrB
Products: ADP; phosphate; putrescine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MIELRNLSKTIDGKEVLKDISLTIGKGEIFGLLGRNGSGKTTLLRLIQQILLPDQGTVLFNQVEIKRHPKVKQNIIYMPV ENPFYDKYTYKQLVAIVSRIYPNFDVTYANELMNRYGIPETKKYRELSTGLKKQLALVLAFASRPALILLDEPTDGIDAV TRHDVLQLMVDEVAERETSILITSHRLEDIERMCNRIGFLEGNQLTNVMDLDDMKEEYMKIQMAFEENVALKIREQNIPI LDHAGVFYTVLIQKNDEKKKNFLQELQPKVWNELPVNLEEVFIAKFGGNRRW
Sequences:
>Translated_292_residues MIELRNLSKTIDGKEVLKDISLTIGKGEIFGLLGRNGSGKTTLLRLIQQILLPDQGTVLFNQVEIKRHPKVKQNIIYMPV ENPFYDKYTYKQLVAIVSRIYPNFDVTYANELMNRYGIPETKKYRELSTGLKKQLALVLAFASRPALILLDEPTDGIDAV TRHDVLQLMVDEVAERETSILITSHRLEDIERMCNRIGFLEGNQLTNVMDLDDMKEEYMKIQMAFEENVALKIREQNIPI LDHAGVFYTVLIQKNDEKKKNFLQELQPKVWNELPVNLEEVFIAKFGGNRRW >Mature_292_residues MIELRNLSKTIDGKEVLKDISLTIGKGEIFGLLGRNGSGKTTLLRLIQQILLPDQGTVLFNQVEIKRHPKVKQNIIYMPV ENPFYDKYTYKQLVAIVSRIYPNFDVTYANELMNRYGIPETKKYRELSTGLKKQLALVLAFASRPALILLDEPTDGIDAV TRHDVLQLMVDEVAERETSILITSHRLEDIERMCNRIGFLEGNQLTNVMDLDDMKEEYMKIQMAFEENVALKIREQNIPI LDHAGVFYTVLIQKNDEKKKNFLQELQPKVWNELPVNLEEVFIAKFGGNRRW
Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI30795238, Length=243, Percent_Identity=27.9835390946502, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI27881501, Length=243, Percent_Identity=27.9835390946502, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI153792144, Length=213, Percent_Identity=27.2300469483568, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI31657092, Length=229, Percent_Identity=27.9475982532751, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI27436953, Length=238, Percent_Identity=26.0504201680672, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI116734710, Length=208, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI150417984, Length=205, Percent_Identity=29.7560975609756, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI45446740, Length=232, Percent_Identity=25.4310344827586, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI21536376, Length=216, Percent_Identity=26.3888888888889, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI47078218, Length=232, Percent_Identity=25.4310344827586, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI27262624, Length=215, Percent_Identity=25.5813953488372, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI27262626, Length=215, Percent_Identity=25.5813953488372, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=25.4807692307692, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI6005701, Length=208, Percent_Identity=25.9615384615385, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=23.5849056603774, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI255708477, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI9665248, Length=210, Percent_Identity=25.2380952380952, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI156105685, Length=192, Percent_Identity=27.6041666666667, Blast_Score=68, Evalue=9e-12, Organism=Escherichia coli, GI87081791, Length=276, Percent_Identity=28.6231884057971, Blast_Score=111, Evalue=7e-26, Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=29.0178571428571, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=30.4147465437788, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI48994943, Length=210, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789593, Length=227, Percent_Identity=28.1938325991189, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1786345, Length=221, Percent_Identity=27.6018099547511, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1788225, Length=232, Percent_Identity=27.1551724137931, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1787112, Length=192, Percent_Identity=30.2083333333333, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790525, Length=275, Percent_Identity=25.0909090909091, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786319, Length=221, Percent_Identity=28.5067873303167, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=26.6331658291457, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=27.1844660194175, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786253, Length=183, Percent_Identity=26.775956284153, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=27.4418604651163, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1790739, Length=203, Percent_Identity=26.6009852216749, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788506, Length=213, Percent_Identity=26.7605633802817, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788165, Length=198, Percent_Identity=31.3131313131313, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786698, Length=195, Percent_Identity=24.6153846153846, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=25.2427184466019, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=25.8373205741627, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=25.6637168141593, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788053, Length=229, Percent_Identity=23.5807860262009, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787758, Length=210, Percent_Identity=26.1904761904762, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI48994997, Length=241, Percent_Identity=22.8215767634855, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787370, Length=206, Percent_Identity=29.126213592233, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788472, Length=220, Percent_Identity=25, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87081709, Length=190, Percent_Identity=28.4210526315789, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789672, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48994883, Length=217, Percent_Identity=24.4239631336406, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788210, Length=234, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790190, Length=268, Percent_Identity=24.2537313432836, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789751, Length=189, Percent_Identity=27.5132275132275, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1787143, Length=213, Percent_Identity=25.8215962441315, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789963, Length=214, Percent_Identity=23.3644859813084, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789962, Length=212, Percent_Identity=24.0566037735849, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17510237, Length=216, Percent_Identity=29.1666666666667, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71983523, Length=212, Percent_Identity=28.3018867924528, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71983516, Length=212, Percent_Identity=28.3018867924528, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71983510, Length=212, Percent_Identity=28.3018867924528, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI115533608, Length=231, Percent_Identity=25.974025974026, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17565586, Length=209, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71992290, Length=206, Percent_Identity=26.2135922330097, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17533971, Length=233, Percent_Identity=26.1802575107296, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193202349, Length=201, Percent_Identity=28.8557213930348, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193208177, Length=204, Percent_Identity=25.4901960784314, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565938, Length=224, Percent_Identity=25.8928571428571, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17555318, Length=223, Percent_Identity=24.2152466367713, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25146777, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=191, Percent_Identity=25.130890052356, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24648314, Length=222, Percent_Identity=30.6306306306306, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24666092, Length=222, Percent_Identity=27.4774774774775, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI221500365, Length=209, Percent_Identity=26.7942583732057, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI116007184, Length=209, Percent_Identity=26.7942583732057, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI116007328, Length=235, Percent_Identity=26.8085106382979, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI28574150, Length=235, Percent_Identity=26.8085106382979, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI221512771, Length=211, Percent_Identity=29.3838862559242, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI85725262, Length=210, Percent_Identity=30, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI28573573, Length=221, Percent_Identity=26.2443438914027, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI28573571, Length=221, Percent_Identity=26.2443438914027, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24650853, Length=209, Percent_Identity=27.7511961722488, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24650855, Length=201, Percent_Identity=28.3582089552239, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI281362751, Length=204, Percent_Identity=28.4313725490196, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24643674, Length=210, Percent_Identity=24.7619047619048, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24582014, Length=226, Percent_Identity=27.8761061946903, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24582012, Length=226, Percent_Identity=27.8761061946903, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24581191, Length=210, Percent_Identity=25.2380952380952, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581189, Length=210, Percent_Identity=25.2380952380952, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581193, Length=210, Percent_Identity=25.2380952380952, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581195, Length=210, Percent_Identity=25.2380952380952, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 33771; Mature: 33771
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIELRNLSKTIDGKEVLKDISLTIGKGEIFGLLGRNGSGKTTLLRLIQQILLPDQGTVLF CCCCCCHHHCCCHHHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE NQVEIKRHPKVKQNIIYMPVENPFYDKYTYKQLVAIVSRIYPNFDVTYANELMNRYGIPE EEEECCCCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC TKKYRELSTGLKKQLALVLAFASRPALILLDEPTDGIDAVTRHDVLQLMVDEVAERETSI HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHEE LITSHRLEDIERMCNRIGFLEGNQLTNVMDLDDMKEEYMKIQMAFEENVALKIREQNIPI EEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCEEEEEECCCCCE LDHAGVFYTVLIQKNDEKKKNFLQELQPKVWNELPVNLEEVFIAKFGGNRRW EECCCEEEEEEEECCCHHHHHHHHHHCHHHHHCCCCCHHHHEEECCCCCCCC >Mature Secondary Structure MIELRNLSKTIDGKEVLKDISLTIGKGEIFGLLGRNGSGKTTLLRLIQQILLPDQGTVLF CCCCCCHHHCCCHHHHHHHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE NQVEIKRHPKVKQNIIYMPVENPFYDKYTYKQLVAIVSRIYPNFDVTYANELMNRYGIPE EEEECCCCCCHHHCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC TKKYRELSTGLKKQLALVLAFASRPALILLDEPTDGIDAVTRHDVLQLMVDEVAERETSI HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHEE LITSHRLEDIERMCNRIGFLEGNQLTNVMDLDDMKEEYMKIQMAFEENVALKIREQNIPI EEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCEEEEEECCCCCE LDHAGVFYTVLIQKNDEKKKNFLQELQPKVWNELPVNLEEVFIAKFGGNRRW EECCCEEEEEEEECCCHHHHHHHHHHCHHHHHCCCCCHHHHEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; putrescine [Periplasm]; H2O [C]
Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]