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The map label for this gene is xpf [H]

Identifier: 154687094

GI number: 154687094

Start: 2794650

End: 2795165

Strand: Reverse

Name: xpf [H]

Synonym: RBAM_026660

Alternate gene names: 154687094

Gene position: 2795165-2794650 (Counterclockwise)

Preceding gene: 154687095

Following gene: 154687092

Centisome position: 71.33

GC content: 40.12

Gene sequence:

>516_bases
ATGCAAGATTTAATCATTGAATATAAAAACGCATTGAAAGATGTCAAAAAGACGTACCGGCAGTTATCGCAGGTTGCTGA
CAGTCTCTTAACCGCTGAACAAAAAAGCGATAAAAAGATCAGTGGTGGCATGATTAGCGACCTTGAATATACAATTGAAT
GGCTGCAGAATGGGAGACAACCCGGTGCCCGCCGTGGTGCTGATCGTAGGGATGTGTATAAAAGGACAATCCTATCTGAT
CCTCGTTTAATTGATGCACTTCCGGAAGAGTATGCCATCATTCAGGAGCCTGATGGAGAGGTGAGTGATTGGGATAGGGA
AAGAATAGAGGATGCTTTATCTGTACTGACAGACCGGGAGAAAGATATTTTTATCATGCACGCTGTGCAAAATTTGTCTT
TTGAAGAAATAGCCGCTTTACTCAATATAAAAAAAGGAACCGTTCAAAAAAATATTGAACGATCCCGCTTAAAAATGATA
AATAGAGCAAATGCCAGCCTTTTTTGTTTAGCTTAA

Upstream 100 bases:

>100_bases
CGCATAGGATTCATTCCAGAGCGTTTTTCCCCACTTTTGGGGATTAAAGGGTTACAAGACCGAAACGATCCGGGAGCGGC
TTAAGGGGAAATAACAGCAT

Downstream 100 bases:

>100_bases
ACAGGCTGTATTTTTTGATCTTTTATTAATGCCAAGCCGCTCACGTAATGCAAATTGAAGAAGCTGCGAAAAGTTTACAC
CTTCTTTTTCTGCTGCTTCC

Product: positive control sigma-like factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MQDLIIEYKNALKDVKKTYRQLSQVADSLLTAEQKSDKKISGGMISDLEYTIEWLQNGRQPGARRGADRRDVYKRTILSD
PRLIDALPEEYAIIQEPDGEVSDWDRERIEDALSVLTDREKDIFIMHAVQNLSFEEIAALLNIKKGTVQKNIERSRLKMI
NRANASLFCLA

Sequences:

>Translated_171_residues
MQDLIIEYKNALKDVKKTYRQLSQVADSLLTAEQKSDKKISGGMISDLEYTIEWLQNGRQPGARRGADRRDVYKRTILSD
PRLIDALPEEYAIIQEPDGEVSDWDRERIEDALSVLTDREKDIFIMHAVQNLSFEEIAALLNIKKGTVQKNIERSRLKMI
NRANASLFCLA
>Mature_171_residues
MQDLIIEYKNALKDVKKTYRQLSQVADSLLTAEQKSDKKISGGMISDLEYTIEWLQNGRQPGARRGADRRDVYKRTILSD
PRLIDALPEEYAIIQEPDGEVSDWDRERIEDALSVLTDREKDIFIMHAVQNLSFEEIAALLNIKKGTVQKNIERSRLKMI
NRANASLFCLA

Specific function: Positive regulatory protein that acts at the late promoter PL [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013249
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19641; Mature: 19641

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLIIEYKNALKDVKKTYRQLSQVADSLLTAEQKSDKKISGGMISDLEYTIEWLQNGRQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHCCCC
PGARRGADRRDVYKRTILSDPRLIDALPEEYAIIQEPDGEVSDWDRERIEDALSVLTDRE
CCHHCCCCHHHHHHHHHHCCCHHHHHCCHHCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
KDIFIMHAVQNLSFEEIAALLNIKKGTVQKNIERSRLKMINRANASLFCLA
CCEEHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MQDLIIEYKNALKDVKKTYRQLSQVADSLLTAEQKSDKKISGGMISDLEYTIEWLQNGRQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHCCCC
PGARRGADRRDVYKRTILSDPRLIDALPEEYAIIQEPDGEVSDWDRERIEDALSVLTDRE
CCHHCCCCHHHHHHHHHHCCCHHHHHCCHHCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
KDIFIMHAVQNLSFEEIAALLNIKKGTVQKNIERSRLKMINRANASLFCLA
CCEEHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]