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The map label for this gene is ytcD [H]

Identifier: 154687035

GI number: 154687035

Start: 2730914

End: 2731300

Strand: Reverse

Name: ytcD [H]

Synonym: RBAM_026070

Alternate gene names: 154687035

Gene position: 2731300-2730914 (Counterclockwise)

Preceding gene: 154687038

Following gene: 154687034

Centisome position: 69.7

GC content: 48.84

Gene sequence:

>387_bases
TTGCTGAAGAAAAAATACAATATATCCGTAGAAGCGGCGCTTGAAGTGATCGGCGGAAAATGGAAGTGTGTGATCCTCTG
CCACCTCATGCGCGGGAAAAAACGGACAAGCGAATTGAAGCGGCTTATGCCGGACATCACCCAGAAGATGCTGACACAGC
AATTGCGGGAGCTGGAAGCTGACGGCGTCATCAACCGGATCGTGTACAATCAGGTGCCGCCGAAAGTGGAATACGAGCTG
AGTGAATACGGGCACAGTCTGGAAAGAATTTTAAACGCGCTGTGCGACTGGGGCGCGATGCATATTGCTAAACGGTACGG
CGAGGTGTCTTCCGTTTTAGAGGACAGCATTTTAAATGACAAATTTAAAGAACCGGGACAAATATAA

Upstream 100 bases:

>100_bases
CGGCAAATGTCATTATGATCGATAGAAGTGTCATTGAAAAGAACGTACTTTTAAGTGCCATAGGCACTTTTTAGTTCCTA
TAGATGAGGAGGAATTACCG

Downstream 100 bases:

>100_bases
GAAAAAAAGCAGGCAGCCTGAGACGCTGATCCTGCTTTTTTTATGGAAGAAAGATCATTTTATATGCAAAAAAACCGATT
GAACAACATATTGATCGGTA

Product: YtcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MLKKKYNISVEAALEVIGGKWKCVILCHLMRGKKRTSELKRLMPDITQKMLTQQLRELEADGVINRIVYNQVPPKVEYEL
SEYGHSLERILNALCDWGAMHIAKRYGEVSSVLEDSILNDKFKEPGQI

Sequences:

>Translated_128_residues
MLKKKYNISVEAALEVIGGKWKCVILCHLMRGKKRTSELKRLMPDITQKMLTQQLRELEADGVINRIVYNQVPPKVEYEL
SEYGHSLERILNALCDWGAMHIAKRYGEVSSVLEDSILNDKFKEPGQI
>Mature_128_residues
MLKKKYNISVEAALEVIGGKWKCVILCHLMRGKKRTSELKRLMPDITQKMLTQQLRELEADGVINRIVYNQVPPKVEYEL
SEYGHSLERILNALCDWGAMHIAKRYGEVSSVLEDSILNDKFKEPGQI

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=84, Percent_Identity=41.6666666666667, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14732; Mature: 14732

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKKYNISVEAALEVIGGKWKCVILCHLMRGKKRTSELKRLMPDITQKMLTQQLRELEA
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGVINRIVYNQVPPKVEYELSEYGHSLERILNALCDWGAMHIAKRYGEVSSVLEDSILND
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFKEPGQI
HCCCCCCC
>Mature Secondary Structure
MLKKKYNISVEAALEVIGGKWKCVILCHLMRGKKRTSELKRLMPDITQKMLTQQLRELEA
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGVINRIVYNQVPPKVEYELSEYGHSLERILNALCDWGAMHIAKRYGEVSSVLEDSILND
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFKEPGQI
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]