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The map label for this gene is araD [H]

Identifier: 154687012

GI number: 154687012

Start: 2708525

End: 2709214

Strand: Reverse

Name: araD [H]

Synonym: RBAM_025840

Alternate gene names: 154687012

Gene position: 2709214-2708525 (Counterclockwise)

Preceding gene: 154687013

Following gene: 154687011

Centisome position: 69.14

GC content: 50.87

Gene sequence:

>690_bases
ATGCTTGAAGCGTTAAAAGAAGAAGTGCTCGCTGCCAATCTGAAGCTTGAGGAACATAACCTTGTCACGTTTACATGGGG
GAATGTCAGCGGCATCGACAGAGAGAGCGGGAGAATCGTCATTAAACCGAGCGGTGTCGATTACAGTGAGCTGACCGCTG
ACAAACTGGTCGTCCTGAATGAGGACGGAGACATTCTCGAAGGCTCGCTGAAACCGTCTTCTGACACGCCGACCCATCTT
TATCTGTATAAAGCGTTTCCGGCTATCGGCGGAATCGTTCATACGCACTCCCGCTGGGCGACGAGCTGGGCGCAGTCCGG
AAGAGACATACCCGCTCTCGGAACGACTCACGCGGATTACTTTGAAAGCGCTGTACCCTGCACGAGGGAAATGTATGAAG
AAGAAATTGTGAAAGATTACGAATATCATACAGGCAAAGTCATAGCCGAAACTTTTCAAAACGAACCGTATGAACAAAAT
CCGGGTGTCCTCGTCCACAGCCACGGCCCGTTCTGCTGGGGAACGGACGCGCTGAATGCCCTGCATAACGCCGTTGTGCT
CGAAACGGTAGCGGAAATGGCCTACCATTCGCTTATGCTGAACAAACAGCTCAGTCCGATCGACAGAGTGCTGCATGATA
AGCATTTTTACAGAAAACACGGGGCGAATGCTTATTATGGCCAAACTTGA

Upstream 100 bases:

>100_bases
GAATATAAAGAGCTCGTACACTACTTCGGCAAAGAAAACAATGTCATGAAACGCCTGAAAGCCATTAAAAACCGTGATTT
TGCGAAAGGGGGAAGCCGCC

Downstream 100 bases:

>100_bases
CGCAGCCGGGTTTCTGATTGATTTAGACGGAACCGTATTCAGGGGGCGGGAGCTGATTGACGGCGCAAAAGAAGCCGTTC
ATACCCTTCAGTCACTGGGC

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLEALKEEVLAANLKLEEHNLVTFTWGNVSGIDRESGRIVIKPSGVDYSELTADKLVVLNEDGDILEGSLKPSSDTPTHL
YLYKAFPAIGGIVHTHSRWATSWAQSGRDIPALGTTHADYFESAVPCTREMYEEEIVKDYEYHTGKVIAETFQNEPYEQN
PGVLVHSHGPFCWGTDALNALHNAVVLETVAEMAYHSLMLNKQLSPIDRVLHDKHFYRKHGANAYYGQT

Sequences:

>Translated_229_residues
MLEALKEEVLAANLKLEEHNLVTFTWGNVSGIDRESGRIVIKPSGVDYSELTADKLVVLNEDGDILEGSLKPSSDTPTHL
YLYKAFPAIGGIVHTHSRWATSWAQSGRDIPALGTTHADYFESAVPCTREMYEEEIVKDYEYHTGKVIAETFQNEPYEQN
PGVLVHSHGPFCWGTDALNALHNAVVLETVAEMAYHSLMLNKQLSPIDRVLHDKHFYRKHGANAYYGQT
>Mature_229_residues
MLEALKEEVLAANLKLEEHNLVTFTWGNVSGIDRESGRIVIKPSGVDYSELTADKLVVLNEDGDILEGSLKPSSDTPTHL
YLYKAFPAIGGIVHTHSRWATSWAQSGRDIPALGTTHADYFESAVPCTREMYEEEIVKDYEYHTGKVIAETFQNEPYEQN
PGVLVHSHGPFCWGTDALNALHNAVVLETVAEMAYHSLMLNKQLSPIDRVLHDKHFYRKHGANAYYGQT

Specific function: L-arabinose catabolism; third step. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=62.3376623376623, Blast_Score=293, Evalue=5e-81,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=61.038961038961, Blast_Score=278, Evalue=3e-76,
Organism=Escherichia coli, GI1790642, Length=227, Percent_Identity=57.2687224669604, Blast_Score=276, Evalue=1e-75,

Paralogues:

None

Copy number: 136 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 25643; Mature: 25643

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEALKEEVLAANLKLEEHNLVTFTWGNVSGIDRESGRIVIKPSGVDYSELTADKLVVLN
CHHHHHHHHHHHHCEEECCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHCCCEEEEEC
EDGDILEGSLKPSSDTPTHLYLYKAFPAIGGIVHTHSRWATSWAQSGRDIPALGTTHADY
CCCCEEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
FESAVPCTREMYEEEIVKDYEYHTGKVIAETFQNEPYEQNPGVLVHSHGPFCWGTDALNA
HHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCCCCEECHHHHHH
LHNAVVLETVAEMAYHSLMLNKQLSPIDRVLHDKHFYRKHGANAYYGQT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLEALKEEVLAANLKLEEHNLVTFTWGNVSGIDRESGRIVIKPSGVDYSELTADKLVVLN
CHHHHHHHHHHHHCEEECCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHCCCEEEEEC
EDGDILEGSLKPSSDTPTHLYLYKAFPAIGGIVHTHSRWATSWAQSGRDIPALGTTHADY
CCCCEEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
FESAVPCTREMYEEEIVKDYEYHTGKVIAETFQNEPYEQNPGVLVHSHGPFCWGTDALNA
HHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCCCCEECHHHHHH
LHNAVVLETVAEMAYHSLMLNKQLSPIDRVLHDKHFYRKHGANAYYGQT
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]