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The map label for this gene is xsa [H]

Identifier: 154686985

GI number: 154686985

Start: 2676918

End: 2678408

Strand: Reverse

Name: xsa [H]

Synonym: RBAM_025570

Alternate gene names: 154686985

Gene position: 2678408-2676918 (Counterclockwise)

Preceding gene: 154686986

Following gene: 154686984

Centisome position: 68.35

GC content: 49.43

Gene sequence:

>1491_bases
TTGTCTCACAATACGGCAGTCATTCAAACTGATATCACACGGGGAACCATTAATAAAAACATATACGGACATTTCGCGGA
ACACCTGGGAAGAGGCATATATGAGGGCATCTGGGTCGGAAAAGATTCCGATATTCCGAATACCGGCGGGGTCAGGACGG
ATGTCGCCGCCGCCCTCAAACAGCTTCAGATTCCCGTCCTCAGATGGCCGGGCGGCTGTTTTGCTGATGAATACCATTGG
GCAAACGGCGTAGGGAAACGCAAAACCATGCTGAATACCCATTGGGGCGGGACGATTGATTCCAATGAATTCGGCACGCA
CGAGTTTATGATGCTTTGTGAACTGCTTGGCTGCGAACCATACATCGCCGGAAACGTCGGCAGCGGAACGGTTAAAGAAA
TGGCTGAGTGGATTGAATACATGACGTTTGAAGCGGGCACGCCGATGTCCGACTGGAGAAAAGAAAACGGGCGGGAAAAA
CCGTGGAAGCTGACATATTTCGGAATAGGAAATGAGAACTGGGGCTGCGGCGGAAACATGCATCCTGAGTATTATGCCGA
CCTTTACAGAAACTTTCAAACCTATGTCCGCAATTACAGCGGTAATGAAATCTATAAAATTGCCGGCGGCGCGAATGTCG
ATGATTACCGCTGGACTGAAACTTTAATGAAAAAAGCCGCTGATCTCATGGACGGGCTGAGCCTTCATTATTACACAATA
CCGGGCGATTTCTGGAAGGGGAAAGGATCAGCGACGGAGTTTACGGAAGATGAATGGTTCATCACGATGAAAAAAGCGGC
GCATATGGATGAATTGATCACAAGGCACAGCGCCATCATGGATCAGTACGATCCCGAAAAAAGAGTCGGGCTGATCATTG
ATGAATGGGGCACGTGGCTTGATCCTGAGCCAGGCACGAATCCGGGCTTTCTGTATCAGCAGAATACGATCCGCGACGCC
CTTGTCGCAGCCACGCATTTTCACATTTTTCATCAGCATGCAGACCGCGTACAGATGGCCAATATCGCGCAAACCGTCAA
TGTGCTTCAGGCAATGATCCTGACAGAAGGGAAAGACATGCTGCTGACGCCGACATATCATGTGTTTGATATGTTTAAGG
TGCATCAGGACGCTTCTCTTTTGGCGACAGAAACAAAAGCAGCCAGGTACGAATGGAATGACGGCCGGCTCCCGCAAGTC
AGCATTTCAGCGTCCAAACAGCAAAACGGAGACATACATATCAGCATTTGCAATATCGATCATCTGCAAAAAGCTGATGT
GAAGATTGAACTGCGGGGCATGAAAAAGACAGGGAAGCCTTCGGGAACGATTCTTCACGCGGAAAAAATGAATGCCCACA
ATACATTCAGCAGTCCGGAAAACGTCAAACCGAAGCCGTTTTCCGGGTTTGCTCAAAAGGGCGGAAAACTTGAGGCGGAG
CTTCCTCCGATGGCGGTTGTACTAATCACGCTGCCTGCGGATCCATCTTAA

Upstream 100 bases:

>100_bases
TTTGTAAAGCGCTTACAAACTTATCCATTCAGCATACATTCCAGATACATAGATCGGCTGTAGTGCTTTCATTCTTATTA
AGGGAAAGGAATGATCAAGT

Downstream 100 bases:

>100_bases
GTTTTGAACGCCTGCCGCCCGGTTATAATACACTGTATAAATAAGATTATTTCCGGCGGGTTCGGGAGAAAATAATATAA
GCATTAAATTAGCATGAACG

Product: Xsa

Products: NA

Alternate protein names: Arabinosidase 2 [H]

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MSHNTAVIQTDITRGTINKNIYGHFAEHLGRGIYEGIWVGKDSDIPNTGGVRTDVAAALKQLQIPVLRWPGGCFADEYHW
ANGVGKRKTMLNTHWGGTIDSNEFGTHEFMMLCELLGCEPYIAGNVGSGTVKEMAEWIEYMTFEAGTPMSDWRKENGREK
PWKLTYFGIGNENWGCGGNMHPEYYADLYRNFQTYVRNYSGNEIYKIAGGANVDDYRWTETLMKKAADLMDGLSLHYYTI
PGDFWKGKGSATEFTEDEWFITMKKAAHMDELITRHSAIMDQYDPEKRVGLIIDEWGTWLDPEPGTNPGFLYQQNTIRDA
LVAATHFHIFHQHADRVQMANIAQTVNVLQAMILTEGKDMLLTPTYHVFDMFKVHQDASLLATETKAARYEWNDGRLPQV
SISASKQQNGDIHISICNIDHLQKADVKIELRGMKKTGKPSGTILHAEKMNAHNTFSSPENVKPKPFSGFAQKGGKLEAE
LPPMAVVLITLPADPS

Sequences:

>Translated_496_residues
MSHNTAVIQTDITRGTINKNIYGHFAEHLGRGIYEGIWVGKDSDIPNTGGVRTDVAAALKQLQIPVLRWPGGCFADEYHW
ANGVGKRKTMLNTHWGGTIDSNEFGTHEFMMLCELLGCEPYIAGNVGSGTVKEMAEWIEYMTFEAGTPMSDWRKENGREK
PWKLTYFGIGNENWGCGGNMHPEYYADLYRNFQTYVRNYSGNEIYKIAGGANVDDYRWTETLMKKAADLMDGLSLHYYTI
PGDFWKGKGSATEFTEDEWFITMKKAAHMDELITRHSAIMDQYDPEKRVGLIIDEWGTWLDPEPGTNPGFLYQQNTIRDA
LVAATHFHIFHQHADRVQMANIAQTVNVLQAMILTEGKDMLLTPTYHVFDMFKVHQDASLLATETKAARYEWNDGRLPQV
SISASKQQNGDIHISICNIDHLQKADVKIELRGMKKTGKPSGTILHAEKMNAHNTFSSPENVKPKPFSGFAQKGGKLEAE
LPPMAVVLITLPADPS
>Mature_495_residues
SHNTAVIQTDITRGTINKNIYGHFAEHLGRGIYEGIWVGKDSDIPNTGGVRTDVAAALKQLQIPVLRWPGGCFADEYHWA
NGVGKRKTMLNTHWGGTIDSNEFGTHEFMMLCELLGCEPYIAGNVGSGTVKEMAEWIEYMTFEAGTPMSDWRKENGREKP
WKLTYFGIGNENWGCGGNMHPEYYADLYRNFQTYVRNYSGNEIYKIAGGANVDDYRWTETLMKKAADLMDGLSLHYYTIP
GDFWKGKGSATEFTEDEWFITMKKAAHMDELITRHSAIMDQYDPEKRVGLIIDEWGTWLDPEPGTNPGFLYQQNTIRDAL
VAATHFHIFHQHADRVQMANIAQTVNVLQAMILTEGKDMLLTPTYHVFDMFKVHQDASLLATETKAARYEWNDGRLPQVS
ISASKQQNGDIHISICNIDHLQKADVKIELRGMKKTGKPSGTILHAEKMNAHNTFSSPENVKPKPFSGFAQKGGKLEAEL
PPMAVVLITLPADPS

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 55793; Mature: 55662

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHNTAVIQTDITRGTINKNIYGHFAEHLGRGIYEGIWVGKDSDIPNTGGVRTDVAAALK
CCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHCEEECCCCCCCCCCCCHHHHHHHHH
QLQIPVLRWPGGCFADEYHWANGVGKRKTMLNTHWGGTIDSNEFGTHEFMMLCELLGCEP
HHCCCEEECCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC
YIAGNVGSGTVKEMAEWIEYMTFEAGTPMSDWRKENGREKPWKLTYFGIGNENWGCGGNM
EEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC
HPEYYADLYRNFQTYVRNYSGNEIYKIAGGANVDDYRWTETLMKKAADLMDGLSLHYYTI
CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
PGDFWKGKGSATEFTEDEWFITMKKAAHMDELITRHSAIMDQYDPEKRVGLIIDEWGTWL
CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
DPEPGTNPGFLYQQNTIRDALVAATHFHIFHQHADRVQMANIAQTVNVLQAMILTEGKDM
CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LLTPTYHVFDMFKVHQDASLLATETKAARYEWNDGRLPQVSISASKQQNGDIHISICNID
EECCCHHHHHHHHHCCCCHHEEECCHHHEEECCCCCCCEEEEECCCCCCCCEEEEEECCC
HLQKADVKIELRGMKKTGKPSGTILHAEKMNAHNTFSSPENVKPKPFSGFAQKGGKLEAE
CCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEC
LPPMAVVLITLPADPS
CCCEEEEEEEECCCCC
>Mature Secondary Structure 
SHNTAVIQTDITRGTINKNIYGHFAEHLGRGIYEGIWVGKDSDIPNTGGVRTDVAAALK
CCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHCEEECCCCCCCCCCCCHHHHHHHHH
QLQIPVLRWPGGCFADEYHWANGVGKRKTMLNTHWGGTIDSNEFGTHEFMMLCELLGCEP
HHCCCEEECCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC
YIAGNVGSGTVKEMAEWIEYMTFEAGTPMSDWRKENGREKPWKLTYFGIGNENWGCGGNM
EEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC
HPEYYADLYRNFQTYVRNYSGNEIYKIAGGANVDDYRWTETLMKKAADLMDGLSLHYYTI
CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
PGDFWKGKGSATEFTEDEWFITMKKAAHMDELITRHSAIMDQYDPEKRVGLIIDEWGTWL
CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
DPEPGTNPGFLYQQNTIRDALVAATHFHIFHQHADRVQMANIAQTVNVLQAMILTEGKDM
CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LLTPTYHVFDMFKVHQDASLLATETKAARYEWNDGRLPQVSISASKQQNGDIHISICNID
EECCCHHHHHHHHHCCCCHHEEECCHHHEEECCCCCCCEEEEECCCCCCCCEEEEEECCC
HLQKADVKIELRGMKKTGKPSGTILHAEKMNAHNTFSSPENVKPKPFSGFAQKGGKLEAE
CCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEC
LPPMAVVLITLPADPS
CCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]