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The map label for this gene is yrrK [C]

Identifier: 154686879

GI number: 154686879

Start: 2567988

End: 2568404

Strand: Reverse

Name: yrrK [C]

Synonym: RBAM_024490

Alternate gene names: 154686879

Gene position: 2568404-2567988 (Counterclockwise)

Preceding gene: 154686880

Following gene: 154686878

Centisome position: 65.54

GC content: 46.76

Gene sequence:

>417_bases
ATGAGAATATTGGGACTTGATCTTGGAACGAAAACACTCGGCGTAGCTTTAAGCGATGAAATGGGCTGGACCGCTCAAGG
CATTGAGACGATAAAAATAAACGAGGCTGAAGGAGATTACGGTCTGGACCGTTTATCCGAGCTGATGAAAGACTATAATG
TAGAGAAGATCGTGCTCGGTTTTCCGAAAAACATGAACGGGACGATCGGTCCGAGAGGCGAAGCCAGCCAAACATTTGCG
AAACTGCTTGAAACAGCGTACAATGTCCCTGTTGTGCTGTGGGACGAGCGTCTGACGACGATGGCGGCTGAAAAAATGCT
GATCGCGGCTGACGTCAGCAGGCAAAAACGAAAAAAAGTCATTGATAAAATGGCGGCTGTCATGATCCTTCAAGGATATC
TGGACAGTTTAAACTAA

Upstream 100 bases:

>100_bases
GCGACGCCCGGAACTTAATTCGCAAACTGGAACGTGACGAATTAATCGAGGAATTGGTAAAATCCTATCTAGAACAGCAT
AAAGAGGCGTAAATACATTC

Downstream 100 bases:

>100_bases
GAGGTGAAAAAAATGGAACACGGCGAAAAACACATTACAATTGTCGATGATCAAGGCAACGAACAGCTTTGCGAAGTGCT
GTTCACATTTGAAAACGACA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFPKNMNGTIGPRGEASQTFA
KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLN

Sequences:

>Translated_138_residues
MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFPKNMNGTIGPRGEASQTFA
KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLN
>Mature_138_residues
MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLGFPKNMNGTIGPRGEASQTFA
KLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKVIDKMAAVMILQGYLDSLN

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=32.3308270676692, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BACA2 (A7Z733)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001422040.1
- ProteinModelPortal:   A7Z733
- SMR:   A7Z733
- STRING:   A7Z733
- EnsemblBacteria:   EBBACT00000006733
- GeneID:   5461308
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_024490
- eggNOG:   COG0816
- GeneTree:   EBGT00050000001393
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   BAMY326423:RBAM_024490-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15267; Mature: 15267

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLG
CEEEECCCCCHHHEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
FPKNMNGTIGPRGEASQTFAKLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVMILQGYLDSLN
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLDRLSELMKDYNVEKIVLG
CEEEECCCCCHHHEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
FPKNMNGTIGPRGEASQTFAKLLETAYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVMILQGYLDSLN
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA