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The map label for this gene is yrdA [H]

Identifier: 154686844

GI number: 154686844

Start: 2531464

End: 2531964

Strand: Reverse

Name: yrdA [H]

Synonym: RBAM_024140

Alternate gene names: 154686844

Gene position: 2531964-2531464 (Counterclockwise)

Preceding gene: 154686845

Following gene: 154686843

Centisome position: 64.61

GC content: 41.32

Gene sequence:

>501_bases
ATGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAATTCGAAGCCGATGCGACACAAAAACTGCTGAATCATCTGAC
TGATGAATCACTTAAACAAGAAATCACTTCACAACATTGGACTTTGGGCCGTATTGCATGGCATACTGTCGCTGCCATTC
ACATCATTACCTCAAACACAGATTTAACGTTTCACGCTCCGGCCGAAGATTATCCTGTTCCTGCATCGGCGCGGTTTATT
GCTGAGAGTTATCATCAAGCCAGTAATGCATTTGTACAGGCGTTAAAAACGCAATGGACTGACGATACACTTCAAGAATG
TGTCAACTTTATTGGTCAGCAATTGCCAAATGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCATCATCGAGGAC
AAATGACTGTCCTTATGAGACAAGCAGGTTTACCTGTTCCGGGTATTTACGGTCCGGCAAAAGAGGAATGGATTAAATTC
GGTTTGGAAGCTCCGAAATAG

Upstream 100 bases:

>100_bases
GAAAATGTCTGTCTATCGTTTTGTTCTTTTTTAACTAAACGGAGCACTATAATTGAACTGTAGATACATAGAAAAACAAA
AAAGGATAAGGAGGATTTTT

Downstream 100 bases:

>100_bases
GATATTGTTGTAAGGGCTCGAATGAATAGATGATACCAATCGATGTTGGTATCTTTTTTGTTTTTTAGAGTTATTAAACC
GGTATCCATGACATGCAGAC

Product: YrdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MFQTLDHFLKSWEFEADATQKLLNHLTDESLKQEITSQHWTLGRIAWHTVAAIHIITSNTDLTFHAPAEDYPVPASARFI
AESYHQASNAFVQALKTQWTDDTLQECVNFIGQQLPNGSLLMFLIQHQNHHRGQMTVLMRQAGLPVPGIYGPAKEEWIKF
GLEAPK

Sequences:

>Translated_166_residues
MFQTLDHFLKSWEFEADATQKLLNHLTDESLKQEITSQHWTLGRIAWHTVAAIHIITSNTDLTFHAPAEDYPVPASARFI
AESYHQASNAFVQALKTQWTDDTLQECVNFIGQQLPNGSLLMFLIQHQNHHRGQMTVLMRQAGLPVPGIYGPAKEEWIKF
GLEAPK
>Mature_166_residues
MFQTLDHFLKSWEFEADATQKLLNHLTDESLKQEITSQHWTLGRIAWHTVAAIHIITSNTDLTFHAPAEDYPVPASARFI
AESYHQASNAFVQALKTQWTDDTLQECVNFIGQQLPNGSLLMFLIQHQNHHRGQMTVLMRQAGLPVPGIYGPAKEEWIKF
GLEAPK

Specific function: Unknown

COG id: COG2318

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dinB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007837 [H]

Pfam domain/function: PF05163 DinB [H]

EC number: NA

Molecular weight: Translated: 18892; Mature: 18892

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQTLDHFLKSWEFEADATQKLLNHLTDESLKQEITSQHWTLGRIAWHTVAAIHIITSNT
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECCC
DLTFHAPAEDYPVPASARFIAESYHQASNAFVQALKTQWTDDTLQECVNFIGQQLPNGSL
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
LMFLIQHQNHHRGQMTVLMRQAGLPVPGIYGPAKEEWIKFGLEAPK
EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MFQTLDHFLKSWEFEADATQKLLNHLTDESLKQEITSQHWTLGRIAWHTVAAIHIITSNT
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEECCC
DLTFHAPAEDYPVPASARFIAESYHQASNAFVQALKTQWTDDTLQECVNFIGQQLPNGSL
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
LMFLIQHQNHHRGQMTVLMRQAGLPVPGIYGPAKEEWIKFGLEAPK
EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]