Click here to switch to the map view.

The map label for this gene is yqeU [H]

Identifier: 154686804

GI number: 154686804

Start: 2492556

End: 2493326

Strand: Reverse

Name: yqeU [H]

Synonym: RBAM_023740

Alternate gene names: 154686804

Gene position: 2493326-2492556 (Counterclockwise)

Preceding gene: 154686805

Following gene: 154686803

Centisome position: 63.63

GC content: 49.16

Gene sequence:

>771_bases
ATGCAACGATATTTTATCGAGCTCACGAAGCAGGAGATGGACGAAACTCCTGATTTTCAAATCACGGGGGAAGACGTCCA
CCATATAGCGAACGTCATGAGAATGAGTGCGGGAGACCGGATTATCTGCTGTTCGAAAGACGGCCATGAAGCGTTATGCC
TGCTTAAAGAGGTTTCTAAAGATCATATATCATGCAGCATTGCTGAATGGACGGGTGAAAACCGTGAACTGCCTCTGAAG
ATCAGGATCGCCAGCGGCCTCCCGAAAGGCGATAAGCTTGAATGGATTATCCAAAAAGGGACCGAGCTGGGGGCAAGTAT
GTTCATCCCTTTTCAAGGCGCCAGATCCGTCGTTAAGCTAGACGACAAAAAGGCAAAGAAAAAGCGGGAGAGATGGGCGA
AAATCGCGAAGGAAGCGGCGGAGCAATCGTACCGCAATGAAATTCCCGAAGTGAAAACCGTTCATACGTTCCGGCAGCTG
CTTGAAATGGCGGAGAATGTCGATAAATGTGTCGTTGCATACGAGGAGTCATCAAAGCAGGGAGAAACGGGCGCTTTCGC
TGCGGAGCTCAAAAGCCTTCCGCAAGGTTCGTCTCTTTTAATCGTATTCGGCCCTGAAGGCGGTCTGACTGAGTCTGAAG
TTCATCAGCTTTCAGAAAAAGGCGCCGTCTTATGCGGCCTCGGACCGAGAATTTTACGGACTGAAACTGCGCCTCTTTAC
GCGTTAAGCGCAGTTTCCTATCATACAGAGTTATTAAGAGGTGATCAGTAA

Upstream 100 bases:

>100_bases
GCGTTGGAAAAAGCCGGCTTTACCATCATAGAAATTCTGTCTATGGAAGATTGGGTCAGCATCATCGCGAAAAAATAACA
GTTAGTAGGTGTCACAGCGT

Downstream 100 bases:

>100_bases
TGGCAACTGTTGCTTTTCATACCCTTGGCTGCAAGGTCAACCATTATGAAACAGAAGCAATCTGGCAGCTGTTTAAAGAT
GCGGGTTATGAACGAAAAGA

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHEALCLLKEVSKDHISCSIAEWTGENRELPLK
IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQL
LEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLY
ALSAVSYHTELLRGDQ

Sequences:

>Translated_256_residues
MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHEALCLLKEVSKDHISCSIAEWTGENRELPLK
IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQL
LEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLY
ALSAVSYHTELLRGDQ
>Mature_256_residues
MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHEALCLLKEVSKDHISCSIAEWTGENRELPLK
IRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKLDDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQL
LEMAENVDKCVVAYEESSKQGETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLY
ALSAVSYHTELLRGDQ

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=220, Percent_Identity=30.4545454545455, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 28517; Mature: 28517

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHEALCLLKEVSK
CCCHHEEHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
DHISCSIAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL
HHCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCEEE
DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCC
GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLY
CCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCHHEECCCCCHH
ALSAVSYHTELLRGDQ
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQRYFIELTKQEMDETPDFQITGEDVHHIANVMRMSAGDRIICCSKDGHEALCLLKEVSK
CCCHHEEHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
DHISCSIAEWTGENRELPLKIRIASGLPKGDKLEWIIQKGTELGASMFIPFQGARSVVKL
HHCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCEEE
DDKKAKKKRERWAKIAKEAAEQSYRNEIPEVKTVHTFRQLLEMAENVDKCVVAYEESSKQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCC
GETGAFAAELKSLPQGSSLLIVFGPEGGLTESEVHQLSEKGAVLCGLGPRILRTETAPLY
CCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCHHEECCCCCHH
ALSAVSYHTELLRGDQ
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9023197; 9384377 [H]