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The map label for this gene is yqfG [C]

Identifier: 154686792

GI number: 154686792

Start: 2481324

End: 2481797

Strand: Reverse

Name: yqfG [C]

Synonym: RBAM_023620

Alternate gene names: 154686792

Gene position: 2481797-2481324 (Counterclockwise)

Preceding gene: 154686793

Following gene: 154686791

Centisome position: 63.33

GC content: 46.2

Gene sequence:

>474_bases
ATGAGTTTACTCATAGATATTGTTGATGAAACGAACAGCGTCTCAGCTGATGCGCTCCAAGAAGTGGAGAAGCTGCTTCA
ATTCGCGGCGGAAAAAGAAGGCGTTCAGGACCAGGCTGAAGTATCGGTCACGATTGTGACAAATGAGGAAATCAGAGAAA
TCAACAGAGACTACCGGGGAAAAGACACTCCGACTGACGTCATTTCGTTTGCGCTTGAAGAAGAAGGCGAAGACGAGGTT
GAAATCGTAGGCGCCGACATGCCGCCTGTTTTAGGAGATATTATCATCAGCGCTGACAGAACGAAAGAGCAGGCGGAAGA
GTACGGCCATTCATTTATGAGAGAGCTCGGTTTTCTGGCCGTGCACGGCTTTTTGCATTTGCTTGGCTATGATCACATGA
CAAAAGAAGAAGAGGAAGAAATGTTTTCAAAGCAAAAGGATTTGCTGGATGAGTATGGACTCACGAGATCATAA

Upstream 100 bases:

>100_bases
CCGAGAACTGGATACGATCGCAAAAACACTATGTGCGACTTTAAAAGGAATTTTCCACTCCCGGATTGAATATCCGGAGG
CTACGAAGAAGGTGAAATAA

Downstream 100 bases:

>100_bases
AAACGAGTGGAGCAGGTTCCTGAAGAGCTTTGTCCATGCATGGAGGGGAATCTGGAAAACGGCGCGGTCAGAGCGGAATT
TTCAATTTCATATTACCGCG

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSLLIDIVDETNSVSADALQEVEKLLQFAAEKEGVQDQAEVSVTIVTNEEIREINRDYRGKDTPTDVISFALEEEGEDEV
EIVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGLTRS

Sequences:

>Translated_157_residues
MSLLIDIVDETNSVSADALQEVEKLLQFAAEKEGVQDQAEVSVTIVTNEEIREINRDYRGKDTPTDVISFALEEEGEDEV
EIVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGLTRS
>Mature_156_residues
SLLIDIVDETNSVSADALQEVEKLLQFAAEKEGVQDQAEVSVTIVTNEEIREINRDYRGKDTPTDVISFALEEEGEDEVE
IVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGLTRS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=122, Percent_Identity=37.7049180327869, Blast_Score=74, Evalue=6e-14,
Organism=Escherichia coli, GI1786880, Length=103, Percent_Identity=35.9223300970874, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BACA2 (A7Z6U6)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421953.1
- ProteinModelPortal:   A7Z6U6
- SMR:   A7Z6U6
- STRING:   A7Z6U6
- EnsemblBacteria:   EBBACT00000007560
- GeneID:   5459726
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_023620
- eggNOG:   COG0319
- GeneTree:   EBGT00050000002084
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- ProtClustDB:   PRK00016
- BioCyc:   BAMY326423:RBAM_023620-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17727; Mature: 17596

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLIDIVDETNSVSADALQEVEKLLQFAAEKEGVQDQAEVSVTIVTNEEIREINRDYRG
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEECHHHHHHHHHHCCC
KDTPTDVISFALEEEGEDEVEIVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLA
CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
VHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGLTRS
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SLLIDIVDETNSVSADALQEVEKLLQFAAEKEGVQDQAEVSVTIVTNEEIREINRDYRG
CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEECHHHHHHHHHHCCC
KDTPTDVISFALEEEGEDEVEIVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLA
CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
VHGFLHLLGYDHMTKEEEEEMFSKQKDLLDEYGLTRS
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA