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The map label for this gene is sigX [H]

Identifier: 154686555

GI number: 154686555

Start: 2219209

End: 2219793

Strand: Reverse

Name: sigX [H]

Synonym: RBAM_021240

Alternate gene names: 154686555

Gene position: 2219793-2219209 (Counterclockwise)

Preceding gene: 154686556

Following gene: 154686554

Centisome position: 56.65

GC content: 42.56

Gene sequence:

>585_bases
ATGGAAGAAACCTTTCAGATATTATATGATGCATACCATCAAGATTTATATCAATTTTTATTTTATATGGTAAAAGATAA
GTCGCAGGCTGAAGATTTGACGCAGGAAGTGTATATCCGCGTCTTGAATTCCTATCATACATTTGAAGGAAGAAGCAGTG
AAAAAACATGGCTGTTATCCATCGCACGCCATGTGGCGATTGACTGGTTCCGCAAGCAGCAGACGATCAGACAGCGTATT
ATGGGTACGTTTGATTGGGATACACAAGATGTCAGAGATCAGCATTTGCTTCCGGACGAACTCGCCGTACAGCATGAAAA
CGTCCGGGAAATTTATACCGCGCTTGATCATTGCACCATTGATCAAAGAGCTGTTATTATCTTGAGATTTATTCAGGGAT
ATTCCATTCAAGAAACAGCCGCCGCTCTCCGCTTCTCGGAAAGCAAAGTCAAAACGACCCAACACAGAGGGCTCAAAATA
CTTCGGAAACAGATGGAGCTTTTGAGGGAGGAGCTAATGGATGATGAAGTCATATTGGAACGAAGAAAGAGTAGAGGAGT
TGTTAAGACAACTTCCGGCGGTTAG

Upstream 100 bases:

>100_bases
TAATATAAATTCCCTTCCAAATTCCAGTTTCTCGTAATATAGTTGTAATGTAACTTTTCAACGCATTTTTACGACAAAAA
AGTGAACGGAGGGGTTTCCC

Downstream 100 bases:

>100_bases
AGATCATCGTTCACCCGAGGCCATTTACCGGAATATTGAAACGGGTAAACCGTACAGGAAAAAACCGGCCCGAAGCTGGA
TCGGCCCCGCCGCAGCCGGC

Product: RNA polymerase sigma factor SigX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MEETFQILYDAYHQDLYQFLFYMVKDKSQAEDLTQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI
MGTFDWDTQDVRDQHLLPDELAVQHENVREIYTALDHCTIDQRAVIILRFIQGYSIQETAAALRFSESKVKTTQHRGLKI
LRKQMELLREELMDDEVILERRKSRGVVKTTSGG

Sequences:

>Translated_194_residues
MEETFQILYDAYHQDLYQFLFYMVKDKSQAEDLTQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI
MGTFDWDTQDVRDQHLLPDELAVQHENVREIYTALDHCTIDQRAVIILRFIQGYSIQETAAALRFSESKVKTTQHRGLKI
LRKQMELLREELMDDEVILERRKSRGVVKTTSGG
>Mature_194_residues
MEETFQILYDAYHQDLYQFLFYMVKDKSQAEDLTQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRI
MGTFDWDTQDVRDQHLLPDELAVQHENVREIYTALDHCTIDQRAVIILRFIQGYSIQETAAALRFSESKVKTTQHRGLKI
LRKQMELLREELMDDEVILERRKSRGVVKTTSGG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. May be involved in the regulation of iron metabolism [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23089; Mature: 23089

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEETFQILYDAYHQDLYQFLFYMVKDKSQAEDLTQEVYIRVLNSYHTFEGRSSEKTWLLS
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
IARHVAIDWFRKQQTIRQRIMGTFDWDTQDVRDQHLLPDELAVQHENVREIYTALDHCTI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
DQRAVIILRFIQGYSIQETAAALRFSESKVKTTQHRGLKILRKQMELLREELMDDEVILE
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RRKSRGVVKTTSGG
HHHCCCCEEECCCC
>Mature Secondary Structure
MEETFQILYDAYHQDLYQFLFYMVKDKSQAEDLTQEVYIRVLNSYHTFEGRSSEKTWLLS
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
IARHVAIDWFRKQQTIRQRIMGTFDWDTQDVRDQHLLPDELAVQHENVREIYTALDHCTI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
DQRAVIILRFIQGYSIQETAAALRFSESKVKTTQHRGLKILRKQMELLREELMDDEVILE
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RRKSRGVVKTTSGG
HHHCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 8052622; 9393439 [H]